Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0811 ATGGCAGCGGTGAATCCACAACCTTTGCAGGCGCGTCCGTTCGTGGAACATCTGCGGGGCCCAGTGCCGATAGAGGACGATGACGGTGACTTTGAGGATGGAGGTGGTAGTGGTGATGCTATGGATGACTTGGAAGAGGCAAATGTTAATTCAGTGACCGTGGCAAACCATGGAAGAGTTCTTATGACTTCCCGTACTAGTGAGCTCACCCTTTCTTTCGAGGGTGAGGTTTACGTGTTTCCTGCTGTGACACCTGAGAAGGTGCAAGCGGTTTTGCTGCTTTTGGGAGGACGGGATGTGCCTGCAGGTGTTCCCACTGTTGAAGTACCATTTGATCAAAGTAACAAGGGCATTGGTGACACTCCAAAGCGATCAAACCTTTCAAGAAGGATAGCCTCCTTGGTTAGGTTCCGCGAAAAACGCAAGGAAAGATGTTTCGACAAGAAGATTAGGTACACTGTGCGAAAAGAGGTGGCACAGAGAATGCATCGCAAGAATGGCCAGTTTGCATCTTTGAAAGAAAGTACAGGTTCATCTAATTGGGATTCTACGGAAAGCTTTCATCAAGATGGCACTCCTCATTCTGAAACACTACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGTGGACCAGCTGGACCAAGGACTCTGTGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGAATTGGAGACTCAAATTGATGTCAAGCCTACTATTCTGGAAGGAGAATTGCCTGGCATCCATGATGAGCAAGGAATTTCTGAGGATGCTTGTAAGGCTGTTGCTGAAGGATCTAGTCATCATGCTGTCAACCCTAGTGATGAGGAATTGCAAACTGGCGACCACTTCTCAAACACACTGCCATTGGGCATTGTTCATTCTTCAGCAAATCATGATGAGCAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGACACAGATATTGACATTCCTGGAAACTTCGATTAG 1047 0.467 MAAVNPQPLQARPFVEHLRGPVPIEDDDGDFEDGGGSGDAMDDLEEANVNSVTVANHGRVLMTSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPAGVPTVEVPFDQSNKGIGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESTGSSNWDSTESFHQDGTPHSETLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSELETQIDVKPTILEGELPGIHDEQGISEDACKAVAEGSSHHAVNPSDEELQTGDHFSNTLPLGIVHSSANHDEQEPLVELSNPSDTDIDIPGNFD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0811 348 Gene3D - 193 254 IPR013088 GO:0006355|GO:0008270
Dere04g0811 348 SMART GATA_3 195 248 IPR000679 GO:0006355|GO:0043565
Dere04g0811 348 MobiDBLite consensus disorder prediction 170 191 - -
Dere04g0811 348 ProSiteProfiles GATA-type zinc finger domain profile. 195 254 IPR000679 GO:0006355|GO:0043565
Dere04g0811 348 SMART tify_2 62 97 IPR010399 -
Dere04g0811 348 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Dere04g0811 348 MobiDBLite consensus disorder prediction 170 196 - -
Dere04g0811 348 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Dere04g0811 348 CDD ZnF_GATA 200 244 IPR000679 GO:0006355|GO:0043565
Dere04g0811 348 Pfam tify domain 65 96 IPR010399 -
Dere04g0811 348 Pfam CCT motif 130 171 IPR010402 GO:0005515
Dere04g0811 348 Pfam GATA zinc finger 201 237 IPR000679 GO:0006355|GO:0043565
Dere04g0811 348 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
Dere04g0811 348 MobiDBLite consensus disorder prediction 297 318 - -
Dere04g0811 348 MobiDBLite consensus disorder prediction 292 348 - -
Dere04g0811 348 PANTHER GATA TRANSCRIPTION FACTOR 28 3 341 IPR045280 GO:0006355
Dere04g0811 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0811 Dere-ChrDere04 8355663 8368787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0811 15 265 Tify Gene Family AT1G51600 46.067 5.24e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere04g0811 CCT 1.3e-13 CL0281