Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0804 ATGTCATCACCAGCAGTGCAGCTGCAGATAAGAGACAGTCTTGTGGTCATAGACAATGGCATAGTGCAAGTGTATATATCCAAACCCGGAGGATTTGTCACTAGAATACAATATAATGGCATTGATAATCTGCTTGAGGTTCTTAACGAAAGAGATAATAGAGGATATTGGGACCTTGTTTGGAGTGAAGCAGGCAGTACAGGAACAACTGGGAGATACGAGCGGGTTCTAGGAACAAGCTTTAGAGTGATAGTGCAAAATGAGGAACAGGTGGAGATCTCATTTACGAGAATGTGGGATCCATCTCTCAAGGGAAAGCTTTTGCCGCTGAATATAGACAAAAGGTATGTGATGCTTCGTAATTCCTCGGGCTTCTACTCATACGCCATTTTTGAACACCTAAAAGAGTGGCCCGCTTTCAACATACCCGAGATCAGGATCGTGTTCAAGCTGCGAAAAGACAAGTATCATTACATGGCCGTAGCGGATAAAAGGCAAAGATTCATGCCTCTCCCTGACGATAGACTACCTGGAAGAGGAAAAGAACTAGCCACCCCAGAAGCAGTTTTACTTGTGAATCCTGTGGAGCCAGAGTTCAAGGGCGAGGTGGATGACAAGTACCAATACTCGAGTGACAACAAAGATCTGAAGGTGCATGGGTGGATAAGCTCGAAAGCCGAAACTGAACCACCCATGGGGTTCTGGGTGATCATACCTAGCAATGAATTCAGAACAGGAGGACTCGTAAAACAGAACCTTACCTCCCATGTGGGCCCCATCAGCCTCGCAAGTGCTCATTACGCAGGCGAGGATCTAGTTCTAAAACTCCAACCGAATGAGCCATGGAAGAAAGTATATGGGCCAATCTTTGTGTACATGAACACTTTATTGGATGATCAAGACAGACTCTGGCTCTGGGAGGATGCCAAAGATCAGATGACGAGGCAAGTCCAAAGTTGGCCTTATGACTTTCCAGCTTCAGAGGATTTTCAGAAGTGTGACCAACGAGGTAGTGTTTATGGCACACTACGAGTCCGAGACAGGTGCCAAAGTGACGATTACATATTGGCACAAGGTGCATATGTAGGACTTGCACCACCTGGAGAAGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGACTAGAGCAAACGAGGAGGGCTACTTCTCTATTAACAACATACGTAGTGGGGATTATAATCTCTATGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAACAATGATGTCCTCACCATCATCCCAGGGTGTGAAATAAATGTCGGTGACATTGTTTTTGAGCCCCCAAGAGATGGTCCAACATCATGGGAGATAGGCATTCCTGATCGGTCTGCTGCTGAATTCTACGTTCCTGATCCTAATCCAAACTACATAAACAGGCTTTATGTCAACCATCCAGACAAGTTTAGGCAGTACGGCTTGTGGGAAAGATATGCGGATCTATACCCAAACGAAGATTTGGTTTACACAGTCGGTGTTAATGACTATAGGAAAGATTGGTTCTTTGCACATGTCACCAGGAAGAAAGACGATGGAACTTATCAAGGAACTACATGGCAAATTAAGTTCAAGCTGGACAACGTGGTGGGAAGTGGAACCTATAAACTACGATTGGCGCTTGCAACTGCAAATTTAGCCGAATTACAGGTTAGAGTGAATGATCCAAAGCAAGACCCTCCTCTATTCACAAGTGGGGTGATTGGGAAGGACAACACAATTGCTAGGCATGGAATCCATGGACTCTACTGGCTATACAGCATTGATGTATCAGGTCTTCTGCTCATGGAAGGCGATAATACTTTGTATCTCACACAGACTATAGCTTTTGGTCCTTTTCAAGGGATCATGTACGACTACATACGTTTTGAAAGCCCCCAATCCTCTAGTTCCAATCCATAA 1929 0.4484 MSSPAVQLQIRDSLVVIDNGIVQVYISKPGGFVTRIQYNGIDNLLEVLNERDNRGYWDLVWSEAGSTGTTGRYERVLGTSFRVIVQNEEQVEISFTRMWDPSLKGKLLPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPAFNIPEIRIVFKLRKDKYHYMAVADKRQRFMPLPDDRLPGRGKELATPEAVLLVNPVEPEFKGEVDDKYQYSSDNKDLKVHGWISSKAETEPPMGFWVIIPSNEFRTGGLVKQNLTSHVGPISLASAHYAGEDLVLKLQPNEPWKKVYGPIFVYMNTLLDDQDRLWLWEDAKDQMTRQVQSWPYDFPASEDFQKCDQRGSVYGTLRVRDRCQSDDYILAQGAYVGLAPPGEAGSWQRECKGYQFWTRANEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNDVLTIIPGCEINVGDIVFEPPRDGPTSWEIGIPDRSAAEFYVPDPNPNYINRLYVNHPDKFRQYGLWERYADLYPNEDLVYTVGVNDYRKDWFFAHVTRKKDDGTYQGTTWQIKFKLDNVVGSGTYKLRLALATANLAELQVRVNDPKQDPPLFTSGVIGKDNTIARHGIHGLYWLYSIDVSGLLLMEGDNTLYLTQTIAFGPFQGIMYDYIRFESPQSSSSNP 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0804 642 Gene3D - 5 268 IPR014718 GO:0030246
Dere04g0804 642 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Dere04g0804 642 Pfam Polysaccharide lyase family 4, domain III 446 631 IPR029411 -
Dere04g0804 642 CDD RGL4_N 15 295 - -
Dere04g0804 642 CDD RGL4_C 446 633 - -
Dere04g0804 642 Gene3D - 443 632 - -
Dere04g0804 642 SUPERFAMILY Galactose-binding domain-like 441 633 IPR008979 -
Dere04g0804 642 FunFam Rhamnogalacturonate lyase B 332 431 - -
Dere04g0804 642 CDD RGL4_M 335 434 IPR029413 -
Dere04g0804 642 Pfam Polysaccharide lyase family 4, domain II 358 430 IPR029413 -
Dere04g0804 642 SUPERFAMILY Starch-binding domain-like 336 427 IPR013784 GO:0030246
Dere04g0804 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 636 - -
Dere04g0804 642 Gene3D - 333 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0804 Dere-ChrDere04 8223650 8227714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0804 1 635 Polysaccharide Lyase AT1G09890 65.415 0.0 870