Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0803 ATGGCGTCAATAGGAGTGCAACTGCTTATTGAAGATAGTCATGTGGTGATGGACAATGGCATACTAAGAGTCACTTTGTCAAATCCTGAGGGAATAGTCACAGGAATAGAATATAATGACATCGACAACTTGCTTGAAGTTCTGAATGAGGAATCTAATAGAGGGTACTGGGATCTTGTGTGGAGCTCACCGGCAAGCACCGGAACCTCCGGTAGATTTGATGTGATAACAGGAACTAGTTTCAGAGTGATAGTGGAAACTGAGGAACAAGTCGAGTTATCCTTCACAAGAACGTGGGATGTCTCCCTTGAAGGCAAGCTGGTTCCCTTAAATATCGATAAAAGGTTCATAATGTGTCGTGGTTCTTCTGGCTTCTACTCCTATGCTATTTATGAGCACTTAGAGGAATGGCCCGCTTTCAATCTTGACGAAACCAGAATCACTTTCAAGCTCAGAAAAGACAAGTTTCATTGTATGGCAATGGCAGATAATAGACAAAGAAACATGCCTCTCCCAGATGACCGATTACCACCTAGAGGACAAGCCCTTGCCTATCCTGAGGCTGTTCTGCTTGTTAACCCTATTGAACCAGAATTGAAAGGAGAGGTGGACGACAAGTACCAATATTCATGTGACAACAAAGATAGCAAAGTACATGGGTGGATCTGCACTGACCTAGCGGTGGGATTCTGGCTAATAACGCCCAGCAACGAGTTCCGATCTGGTGGACCCCTCAAACAGAACCTAACTTCTCACGTGGGACCCACCACTCTTGCTGTGTTTCTAAGCGCTCATTACAGTGGAGAAGATCTGGTGCCAAAATTCAAAGCTGGTGAGACATGGAAGAAAGTTTTGGGTCCAGTTTTCATTTACTTGAATTCTTCCTATGATGGAGACGACCCACTTGTTAAGCTATGGGAAGACGCCAAACTTCAGATGCAGATAGAAGTTCAAAGCTGGCCCTACAATTTTCCCGCTTCACAAGACTACCCAAAGTGGGACGAACGTGGCAATGTCAATGGCAGGCTACTCGTCCGAGACAGATATATTAGCGATGACTATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTTCTCCAGGAGACGTTGGATCATGGCAAAAAGAATGCAAGAATTACCAGTTTTGGGCTAAAGCAGACGATGATGGATATTTCTCCATCAACAATATACGTCCTGGTGACTATAATCTTTACGCATGGGTGCCTGGTTTTATTGGTGACTATAGATCTGATGTGGTTATGAACATAACTGAAGGTAGTGACATAGATGTTGGTGATCTTGTATATGAACCTCCAAGAGAAGGTCCAACGTTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCCAATCCCAAATACATAAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGGCAGTATGGGTTATGGGAGAGATATGCAGAGTTATACCCTGACAAAGACTTGATTTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAACACATATCAAGGAACCACATGGCAAATCAATTTTAAACTGGACAAAGTGGAAAAGCGAAGTGCCTATAAACTGCGAGTAGCTCTGGCATCAGCAACATTTTCTGAACTGCAAGTTCGAGTTAATGATTCAAAGGCAACTCGTCCTCTATTTTCAAGTGGGTTAATAGGGAGGGATAACTCCATTGCTAGGCATGGAATTCATGGACTGTATAGGCTTTTCAGTGTGGACATATGGGGTGCTCGACTTGTGGAAGGAGATAATGCCATCTTTTTAACACAGTCCAGAGGCAATAGTCCATTTCAGGGCATTATGTATGATTATATTCGTCTAGAAGAGGAGGACGATGACGATGATCTTCACCAACCAGTCCCCGTTCTTGATGCTGCTGTTCGTTTTGGTTCAGGGTTATGTTCCTTATCCAGCTATATTTCTGCCCAGGTGGTAATGGATAATGGCATAGTTCAAGTCACCTTATCAAATCCTGGAGGATCAGTCACGGGAATCCAATACAATGGTATTGACAATTTGCTTGAAGTTCTAAACCAGGAATTTGACAGAGGGTACTGGGATGTTGTATGGGACGAGGCTGGTAGCAAAGGAACAATGGGTAAAAAAAGAAGAAAAAAGGGTACATTAGATAGGTTCCATTACATGGTTATAGCGGACAATAGGCAAAGATTTATGCCTCTGCCCGACGACCGGTCAGAAGAAAGAGGGCAGGTTTTAGCCTACCCTGAGGCTGTTCTCCTTGTCAATCCATTGGAGCCAGAGTTCAAAGGAGAGGTGGACGACAAGTACCAGTACTCATGCGAGACTCGCAACAACAGGGTTCATGGCTGGATATGCATGGATCCATCTGTAGGGTTCTGGCAAATTACGCCTAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATATCTTACTTCTCATGTGGGCCCCACTACTCTCTCTGTATTTCATAGCACGCATTATTCCGGAGAAGATCTAATAATGAAGTTTGGGCCCAATGAGCCATGGAAGAAAGTCTTTGGGCCCATATTCATATTCCTTAATTCTTTGTCAAATGGAGAAAGCCCGATTCTGCTCTGGGAAGACGCTAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATGCATTTCCAGCTTCAGAAGACTTTCCCTCATCTGACCAACGGGGCAAGGTTAAAGGTAGATTACTTGTACGAGACAGGTATATCGGTGATGGGTGTATCCCAGTAAGTGGTGCTCATGTGGGATTAGCTGCCATAGGAGATGCAGGATCTTGGCAGAGAGAATCCAAGGGTTATCAATTCTGGACCATTACTGATGATAAAGGCTACTTCTCAATCATTGACATACGTGCTGGGCACTATAATCTTTACTCCTGGGTCACTGGATATATTGGCGATTATCGATATGACAATGTCATTAACATAACCCCAGGTTGTGAAGTTGATGTGGGAGAACTTGTTTATGAGCCTCCAAGAGATGGCCCTACATTGTGGGAAATAGGCATCCCTGATCGCTCTGCAGCTGAATTCTATATCCCAGATCCAAATCCCAAGTACATCAACAAGCTTTATGTCGATCAAGATAGGTTTAGGCAATATGGATTGTGGGAGAGGTATGCAGAAATGTATCGAAATGAAGACTTGGTCTACACCATAGGCATCAGTGACTACAGAAAAGATTGGTTTTTTGCTCAAGTCAACAGGAAGAAAGATAACAACACCTACCAAGGAACCACGTGGCGAATTAATTTCAAACTTGATGATGTCAATAATAACGGAACCTACAAGTTGCGATTGGCTCTGGCATCTGTGCATTCTGCTGAACTACAAGTACATTAA 3423 0.4368 MASIGVQLLIEDSHVVMDNGILRVTLSNPEGIVTGIEYNDIDNLLEVLNEESNRGYWDLVWSSPASTGTSGRFDVITGTSFRVIVETEEQVELSFTRTWDVSLEGKLVPLNIDKRFIMCRGSSGFYSYAIYEHLEEWPAFNLDETRITFKLRKDKFHCMAMADNRQRNMPLPDDRLPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSKVHGWICTDLAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGETWKKVLGPVFIYLNSSYDGDDPLVKLWEDAKLQMQIEVQSWPYNFPASQDYPKWDERGNVNGRLLVRDRYISDDYISAKGAYVGLASPGDVGSWQKECKNYQFWAKADDDGYFSINNIRPGDYNLYAWVPGFIGDYRSDVVMNITEGSDIDVGDLVYEPPREGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQINFKLDKVEKRSAYKLRVALASATFSELQVRVNDSKATRPLFSSGLIGRDNSIARHGIHGLYRLFSVDIWGARLVEGDNAIFLTQSRGNSPFQGIMYDYIRLEEEDDDDDLHQPVPVLDAAVRFGSGLCSLSSYISAQVVMDNGIVQVTLSNPGGSVTGIQYNGIDNLLEVLNQEFDRGYWDVVWDEAGSKGTMGKKRRKKGTLDRFHYMVIADNRQRFMPLPDDRSEERGQVLAYPEAVLLVNPLEPEFKGEVDDKYQYSCETRNNRVHGWICMDPSVGFWQITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGEDLIMKFGPNEPWKKVFGPIFIFLNSLSNGESPILLWEDAKQQMVNEVESWPYAFPASEDFPSSDQRGKVKGRLLVRDRYIGDGCIPVSGAHVGLAAIGDAGSWQRESKGYQFWTITDDKGYFSIIDIRAGHYNLYSWVTGYIGDYRYDNVINITPGCEVDVGELVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPKYINKLYVDQDRFRQYGLWERYAEMYRNEDLVYTIGISDYRKDWFFAQVNRKKDNNTYQGTTWRINFKLDDVNNNGTYKLRLALASVHSAELQVH 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0803 1140 SUPERFAMILY Starch-binding domain-like 378 424 IPR013784 GO:0030246
Dere04g0803 1140 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 734 1139 - -
Dere04g0803 1140 FunFam Rhamnogalacturonate lyase B 912 1011 - -
Dere04g0803 1140 SUPERFAMILY Galactose-binding domain-like 1021 1139 IPR008979 -
Dere04g0803 1140 CDD RGL4_N 11 295 - -
Dere04g0803 1140 Gene3D - 771 867 IPR014718 GO:0030246
Dere04g0803 1140 Gene3D - 7 312 IPR014718 GO:0030246
Dere04g0803 1140 CDD RGL4_N 666 875 - -
Dere04g0803 1140 Gene3D - 334 431 - -
Dere04g0803 1140 Gene3D - 912 1010 - -
Dere04g0803 1140 SUPERFAMILY Starch-binding domain-like 913 1011 IPR013784 GO:0030246
Dere04g0803 1140 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
Dere04g0803 1140 Pfam Rhamnogalacturonate lyase family 666 724 IPR010325 -
Dere04g0803 1140 Pfam Rhamnogalacturonate lyase family 734 784 IPR010325 -
Dere04g0803 1140 Gene3D - 442 633 - -
Dere04g0803 1140 Gene3D - 1022 1140 - -
Dere04g0803 1140 SUPERFAMILY Galactose mutarotase-like 12 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dere04g0803 1140 CDD RGL4_M 335 434 IPR029413 -
Dere04g0803 1140 FunFam Rhamnogalacturonate lyase B 332 431 - -
Dere04g0803 1140 SUPERFAMILY Galactose mutarotase-like 673 876 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dere04g0803 1140 CDD RGL4_C 446 632 - -
Dere04g0803 1140 SUPERFAMILY Galactose-binding domain-like 442 633 IPR008979 -
Dere04g0803 1140 Pfam Polysaccharide lyase family 4, domain II 938 1010 IPR029413 -
Dere04g0803 1140 Pfam Polysaccharide lyase family 4, domain II 358 430 IPR029413 -
Dere04g0803 1140 CDD RGL4_M 915 1014 IPR029413 -
Dere04g0803 1140 Pfam Polysaccharide lyase family 4, domain III 444 632 IPR029411 -
Dere04g0803 1140 Pfam Polysaccharide lyase family 4, domain III 1024 1139 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0803 Dere-ChrDere04 8206890 8219380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0803 1 633 Polysaccharide Lyase AT1G09890 71.924 0.0 952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0803 04 8206890 8219380 Dere04g0803 04 8206890 8219380 ECH