Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0802 ATGTCGACCCCAGGGGTACGGTTGCACATTCAAGGTCGTCATGTGGTGATGGACAATGGCATACTCCAAGTTACCTTATCAAATCCTGAGGGAATTGTTACTGGGATACGATATGGTGGTGTGGACAATTTGCTTGAAGTTCTTAACAATGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATCAAAGGAACGTGTTTTAAAGTCATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTCGTTCCCTTAAATATTGACAAAAGATTTATAATGCTCCATGGTACATCAGGCTTCTACTCTTATGCAATATATGAGCACCTAGCTGGATGGCCAGATTTTGATATTGGTGAAACGAGGATTACCTTCAAGCTACGAAAAGACAAGTTTAATTACATGGCTGTAGCAGACAATAGGCAAAGAATTATGCCTTTTCCAGATGATCGGTTACCAGGAAGATGCCAATCCTTGGCCTACCCAGAAGCTGTCCTACTAGTCAGTCCCAGAGATCCACAACTCAGGAGCGAGGTGGATGACAAGTATCAGTATTCGTGTGATAACATAGATAATCGAGTCCATGGGTGGATATCTTTCAACCCACCAGTGGGATTCTGGCAAATCACACCTAGTGATGAGTTCCGGTCTGGTGGACCCCTTAAACAGAATTTGACCTCACATGTTGGCCCTACCATGCTTGCAATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGCTCCCAAATTTAGAGGAGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTGTTTATATATCTTAATTCTGGATCAGCTGGTGATGACCCACTTTGGCTGTGGGAGGATGCAAAAATACAGATGATGACTGAAGTTCAGAGTTGGCCATACTTTTTCCCAGATTCAGAGGATTTCATGAAGTCAGACCAACGGGGTAACGTTAATGGTAGACTACTTGTCTTAGACAGGTACATCAGCACAGACTTAATGCCAGCAAATGGTGCTTATATTGGTCTGGCCCCACCAGGAGATGTGGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAACGGATCTTTTACCATTAGGAATATACGAGCAGGCGACTACAACCTTTATGCTTGGGTCCCTGGTTTTGTTGGGGACTACCGATTTGATGAGTTTATGAAGATAACTTCAGGTTCCCATATAGAATTGGGTGAACTTGTGTATGAGCCCCCAAGGGATGGACCCACATTGTGGGAAATAGGCATACCTGATAGATCTGCTGCAGAATTTTATGTTCCTGATCCGAATCCACAATTCATGAATAAGCTTTTTGTCAATCATCCAGAGAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACTGAATTGTATCCTGATGCAGATTTGGTTTACACAGTTGGTGCTAGTAATTATTCCAAGGATTGGTTTTTCGCCCAGGTTCCCAGAAAAAAAGAGGATAACACTCATGTAGGAACTACTTGGCAAATCAAATTTGAACTCAATAATGTTGATAAGGGAAGCACATATAAATTAAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGATCCAATTGCAAGGCGCCCCCTATTTACAAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGACTCTATTGGCTGTTCAATGTGAATGTACCAGGTGCTCTTCTTGTTGATGGCACAAACACTATATTTTTAACACAACCAAGATGCACCAGCCCTTTTCAGGGCTTCATGTATGATTATATCCGTTTGGAAGGTCCTCCTTGTTTTTAA 1905 0.4236 MSTPGVRLHIQGRHVVMDNGILQVTLSNPEGIVTGIRYGGVDNLLEVLNNETNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLHGTSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAVADNRQRIMPFPDDRLPGRCQSLAYPEAVLLVSPRDPQLRSEVDDKYQYSCDNIDNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTMLAMFLSSHYAGQDLAPKFRGGEPWKKVFGPVFIYLNSGSAGDDPLWLWEDAKIQMMTEVQSWPYFFPDSEDFMKSDQRGNVNGRLLVLDRYISTDLMPANGAYIGLAPPGDVGSWQRECKDYQFWTRADENGSFTIRNIRAGDYNLYAWVPGFVGDYRFDEFMKITSGSHIELGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQFMNKLFVNHPERFRQYGLWDRYTELYPDADLVYTVGASNYSKDWFFAQVPRKKEDNTHVGTTWQIKFELNNVDKGSTYKLRVAIASATLAELQIRINDPIARRPLFTSGLIGRDNSIARHGIHGLYWLFNVNVPGALLVDGTNTIFLTQPRCTSPFQGFMYDYIRLEGPPCF 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0802 634 CDD RGL4_N 6 297 - -
Dere04g0802 634 Pfam Rhamnogalacturonate lyase family 11 200 IPR010325 -
Dere04g0802 634 Gene3D - 438 629 - -
Dere04g0802 634 CDD RGL4_C 442 629 - -
Dere04g0802 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Dere04g0802 634 CDD RGL4_M 331 430 IPR029413 -
Dere04g0802 634 Gene3D - 328 424 - -
Dere04g0802 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
Dere04g0802 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Dere04g0802 634 SUPERFAMILY Starch-binding domain-like 354 411 IPR013784 GO:0030246
Dere04g0802 634 Gene3D - 8 307 IPR014718 GO:0030246
Dere04g0802 634 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dere04g0802 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 632 - -
Dere04g0802 634 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0802 Dere-ChrDere04 8200249 8205424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0802 1 632 Polysaccharide Lyase AT1G09910 70.886 0.0 957