Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0799 ATGGGGAGAGGGAAGATCGTGATAAGGCGAATCGACAATTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGAAGGAACGGTTTACTGAAAAAGGCAAAGGAGCTGGCAATCCTGTGCGATGCTGAGGTTGGAGTAATCATCTTCTCCAGCACTGGCAAGCTCTACGATTTCGCTAGCACCAGTATGAAATCAGTGATTGATCGACACAACAAAACAAAAGATCATCATCATCATCCTGGGAGTTCAACCAATGAAGTGAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCAAAACTTGCAAGGAAGTCACCGGCAAATGATGGGAGAAGAACTTTCAAGTTTGACTGTAAAGGAATTACAGGGTTTGGAAAGCCAACTGGAAATTAGCCTTCGAGGTGTCCGTATGAAAAAGGACCAACTATTAATGGACGAAATACAGGAATTAAACCGAAAGGGAAGCCTTATAAACCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATTGAATTTAAGAAAAAGGTCTATGAAACAAGAGATGGGAATGTCACAAACAGAAATAATGTTCTCACAAATGGTCTAGGCATACGAGAGGAATTGCAGGTGCCTGTACATCTCCAGCTCAGCCAGCCACAGCAACAAACCTATGAGACTCCTTCAGGACCTACAAAATTGGGGTATGATCTTTGA 717 0.4282 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFASTSMKSVIDRHNKTKDHHHHPGSSTNEVKFWQREAAMLRQQLQNLQGSHRQMMGEELSSLTVKELQGLESQLEISLRGVRMKKDQLLMDEIQELNRKGSLINQENVELYKKVNLIRQENIEFKKKVYETRDGNVTNRNNVLTNGLGIREELQVPVHLQLSQPQQQTYETPSGPTKLGYDL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0799 238 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Dere04g0799 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere04g0799 238 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Dere04g0799 238 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere04g0799 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere04g0799 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere04g0799 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere04g0799 238 MobiDBLite consensus disorder prediction 218 238 - -
Dere04g0799 238 Coils Coil 86 106 - -
Dere04g0799 238 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Dere04g0799 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere04g0799 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere04g0799 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere04g0799 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere04g0799 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 221 - -
Dere04g0799 238 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0799 Dere-ChrDere04 8130067 8147077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0799 1 231 MADS-box Gene Family AT2G22630 57.806 2.63e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere04g0799 K-box 2.7e-28 No_clan