Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0789 ATGGAACTCTGTGAACATGATCATTTCATGGAAGAATTACTAGCTATGAGAAGGGAAACGTGGGACTCCGTCCCATCAGAATCAAACCAGCTCTTCTCTAATGGATGGGGTTTTGATTGTTTTGATCAAAACTCTGTAGCTTTTCTTCCATCCTCTTCCTGTCAAGAAATTCCTCAAAGTTACAACAACGACTACGCCTTCAATGAAATCTACAGTTCCTTACTCAACGAATTCTCTGCACCCCAGACTGTTGATTCGTCTTCTTCATCGTACAACGTTCTTGATACTCAATTTCTGGGTCAAGATGATTACACATTGTCCATGGTGGAAGAATTAGAGGATCCGGGTTTGCTTGGGGAAGAACTTCAGAGTTTGGACCTGCAAACCGCATGTAAGATAGAGCCAAGCCAATCCCCTGAAATCCCCGTTTTCAACACGGGTGATGCGTCTTTCGAGAGAAAGAATAGAGCCAAGAAGCTTCAGGGCCAGCCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGGAAGAGATTGAACGATCGCCTCTCAATGCTAAGATCAATTGTCCCCAAGATAAGCAAGATGGACAGAACATCTATACTTGGAGACACTATAGATTACATGAAAGAACTCCTGGAGAGGATTAACAAATTGCAACAAGAAATAGAGGTAGATTCGAACATGGGGGGCATTTTTAAGGATGTCAAGCAGAATGAAATCTTAGTGAGAAATTCACCCAAGTTTGATGTGAAGAGGAGGAATGAGGACACCCAGGTTGAAATTTACTGCGCAGGGAAGCCAGGGTTGTTGCAATCTACGGTGAACACATTGGAAGCATTAGGTCTTGAGATTCAAGAATGTGTCATAAGTTGTTTCAATGATTTCACAGTGCAGGCTTGTTGCTCAGAGGAATTGGAGCAGAGGACAATACTGAGTTCTGAAGATATAAAGCAAGCATTATTTAGAAGCGCAGGATATGGAGGAAGATGTTTGTAA 996 0.4247 MELCEHDHFMEELLAMRRETWDSVPSESNQLFSNGWGFDCFDQNSVAFLPSSSCQEIPQSYNNDYAFNEIYSSLLNEFSAPQTVDSSSSSYNVLDTQFLGQDDYTLSMVEELEDPGLLGEELQSLDLQTACKIEPSQSPEIPVFNTGDASFERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERINKLQQEIEVDSNMGGIFKDVKQNEILVRNSPKFDVKRRNEDTQVEIYCAGKPGLLQSTVNTLEALGLEIQECVISCFNDFTVQACCSEELEQRTILSSEDIKQALFRSAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0789 331 Coils Coil 201 228 - -
Dere04g0789 331 Gene3D - 152 226 IPR036638 GO:0046983
Dere04g0789 331 SMART finulus 168 217 IPR011598 GO:0046983
Dere04g0789 331 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Dere04g0789 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Dere04g0789 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 73 326 - -
Dere04g0789 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
Dere04g0789 331 CDD ACT_UUR-ACR-like 257 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0789 Dere-ChrDere04 8041648 8043068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0789 153 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.835 3.10e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere04g0789 HLH 7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0789 04 8041648 8043068 Dere04g0789 04 8041648 8043068 ECH