Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0787 ATGTCTCCGATGTCGCCGCCGCTGCTTAGCATAGGAGAGGATGAATGTCAAAGCAATGTCACTTTATTGGCCTCTTCGACCACCATGGAAAGTGTTTGCCTCGATAACTCCGAATTGAAAGAACGAAACTACATGGGATTATCTGATTGTTCTTCAGTGGACAGCTCAGTTCCGTCTTTCTCAGATGAGAGTAAAAGTAAGCTGAACCTAAAAGCTACGGAGCTAAGGCTTGGGCTTCCAGGATCCCAGTCTCCTGAAAGAGAAGACTCAGATCATCTCTGCTTAAGAAGCTCAGCTCAACTTGATGAAAAACCTCTGTTTCCTCTGCATCCTTCAACCGATGATCACCATTGCTTGTCAAAGAATGGTGTTTTGGGTAACAAAAGAGGGTTCTCAGATGCTATGAATGGGTTCACCAAGGGGCAATACCTAATAAATTCGGATGTGAATACAATGTTGTCACCTAGACCTTCTCCTAATGTAGGGTTGAAAACTAGTTCTATGCTTGACAAAGCTAAAGAAGTAGCACCTACAAAGGGGGAACTTGAGAGGCCTCATATAACGAATGAAATCAGACCAAATAATAATGGCTCTGCAAATAATAATAGCAGTGCACCTGCTGCTAAGGCACAGGTTGTGGGTTGGCCTCCTATAAGATCATTTAGGAAAAATTCGTTGGCCACTACAACAAAGAACACCAAAGAAGTAGATGGAAAACCGCTGTTTGTCAAGGTCAGCATGGATGGTGCCCCATATTTAAGGAAAGTAGACTTGAAGAATTATTGCGCATATCCAGAACTCTCTTCTTCGCTGGAGAAGATGTTCAGTTGTTTTACTATAGTGATTTCAGGTCAATGTGGATCTCATGGAACTCTGGGACAGGAGATGCTGAATGAAAGCAAGCTGAAGGATCTCCTTCATGAGTCTGAATATGTTCTTACTTATGAGGACAAAGATGGTGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTGTCGAAACATGCAGGAGGATGAGGATCATGAAGAGTTCTGATGCCATTGGTTTAGCTCCCAGAAGAAAGTAA 1071 0.4314 MSPMSPPLLSIGEDECQSNVTLLASSTTMESVCLDNSELKERNYMGLSDCSSVDSSVPSFSDESKSKLNLKATELRLGLPGSQSPEREDSDHLCLRSSAQLDEKPLFPLHPSTDDHHCLSKNGVLGNKRGFSDAMNGFTKGQYLINSDVNTMLSPRPSPNVGLKTSSMLDKAKEVAPTKGELERPHITNEIRPNNNGSANNNSSAPAAKAQVVGWPPIRSFRKNSLATTTKNTKEVDGKPLFVKVSMDGAPYLRKVDLKNYCAYPELSSSLEKMFSCFTIVISGQCGSHGTLGQEMLNESKLKDLLHESEYVLTYEDKDGDWMLVGDVPWEMFVETCRRMRIMKSSDAIGLAPRRK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0787 356 MobiDBLite consensus disorder prediction 187 209 - -
Dere04g0787 356 ProSiteProfiles PB1 domain profile. 240 345 IPR000270 GO:0005515
Dere04g0787 356 Pfam AUX/IAA family 73 354 IPR033389 -
Dere04g0787 356 SUPERFAMILY CAD & PB1 domains 234 344 - -
Dere04g0787 356 Gene3D - 234 354 - -
Dere04g0787 356 MobiDBLite consensus disorder prediction 189 208 - -
Dere04g0787 356 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 350 IPR003311 GO:0005634|GO:0006355
Dere04g0787 356 FunFam Auxin-responsive protein 235 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0787 Dere-ChrDere04 8027975 8030218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0787 242 345 B3 DNA Binding Superfamily AT1G19220 30.769 2.04e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere04g0787 AUX_IAA 1e-86 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0787 04 8027975 8030218 Dere04g0787 04 8027975 8030218 ECH