Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0733 ATGACTGCAGAAACCCAGAATTCTGAAACAGAGAGCAGCTCAAACTCAAACTCATTTCCATCTTCCCCGACCTCCCCACTCCAAAACCCTGTTTCACAAGCTAAACCCCAAAACCCAGAATCCAAAAAAGTGAAACGAATTCGCGACTCCAACAAGCACCCAGTGTATCGTGGGGTCCGCATGCGAAACTGGGGCAAATGGGTCTCTGAAATTCGCGAGCCACGCAAGAAATCGCGCATATGGCTGGGTACATTCCCAACGCCTGAAATGGCTGCCAGAGCACACGACGTCGCTGCTTTGAGCATCAAGGGTGATTCGGCTATTCTCAATTTCCCCGAACTGGCCAACTTGCTTCCTCGTCCTGTCTCGCTCGCTCCTCGAGATGTGCAGGCGGCAGCGGCGAAAGCTGCTCAAATGGATAAGTTCGACCTGCCGACAACCTCGTCGTCGTCTTCACTGTTGTCGTTGGTTTCAGCAATGGACTTGTGTACTGAGTCAGAGGAGCTAAGCGAGATCATAGAGTTGCCAAACTTGGAAACGAGCAACGACACTCTGGAATTGGTGAAGGAGTTTGTGTTTATGGACTCGGAAGATGGATGGATGTACGAGCCACCGTGGTTACAGAGCATGGACGATTCTGATGGGTACGTTGCTGATCAGCTGTGGAATTATTAA 675 0.5067 MTAETQNSETESSSNSNSFPSSPTSPLQNPVSQAKPQNPESKKVKRIRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGDSAILNFPELANLLPRPVSLAPRDVQAAAAKAAQMDKFDLPTTSSSSSLLSLVSAMDLCTESEELSEIIELPNLETSNDTLELVKEFVFMDSEDGWMYEPPWLQSMDDSDGYVADQLWNY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0733 224 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Dere04g0733 224 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Dere04g0733 224 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Dere04g0733 224 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Dere04g0733 224 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Dere04g0733 224 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Dere04g0733 224 MobiDBLite consensus disorder prediction 39 55 - -
Dere04g0733 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 185 - -
Dere04g0733 224 MobiDBLite consensus disorder prediction 1 38 - -
Dere04g0733 224 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Dere04g0733 224 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Dere04g0733 224 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Dere04g0733 224 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0733 Dere-ChrDere04 7387791 7388465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0733 42 216 AP2-EREBP Transcription Factor Family AT5G11590 67.742 2.46e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g0733 AP2 3.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0733 04 7387791 7388465 Dere04g0733 04 7387791 7388465 ECH