Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0688 ATGGGGATAGCAGAAGCATGCTCCAGACTCATTGGAGACTTTATACAGGCTTTCAGATGCTCACAACAAAGCTCAAAGCCCCAACTTGATAATGACCATCCTCCCTGCAGGCCCCAGAATGTGCTCAAACTTGATGACAAGATGGTTAGTGCTCTGATCACTGTCTTTGGTATGGAAAACAATGGAAGAATCAAGAAGCAAAATGCACGGCGAGTGGTGGAGAAGCTTGGTTTGCTTTATGGTTCTGAGGAGGAGAAGCCCTCTGGGTTTGAACTTCCGGGCCATGGTGGCTTAGAAGATGATGAAGTGCCAGTAGAAGAAGTGCTCAGCGATCTGGAAGATATGTCAAAGCGCAGTGAGCTTTTACGCGAGGCCTTTAAAATCTTCGATGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAAAGGGTTCTGGATTGCTTGGGTTTGGATAAAGGTTGGGACATGAGTACAATTGAGAAAATGGTGAAGGTTGTAGATTTGAACTTTGATGGTAAGGTCGATTTCAGTGAGTTTGAGCTGATGATGGGGTAG 558 0.4552 MGIAEACSRLIGDFIQAFRCSQQSSKPQLDNDHPPCRPQNVLKLDDKMVSALITVFGMENNGRIKKQNARRVVEKLGLLYGSEEEKPSGFELPGHGGLEDDEVPVEEVLSDLEDMSKRSELLREAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMSTIEKMVKVVDLNFDGKVDFSEFELMMG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0688 185 CDD EFh 122 180 IPR002048 GO:0005509
Dere04g0688 185 Pfam EF-hand domain pair 121 184 IPR002048 GO:0005509
Dere04g0688 185 SUPERFAMILY EF-hand 54 184 IPR011992 -
Dere04g0688 185 ProSitePatterns EF-hand calcium-binding domain. 130 142 IPR018247 -
Dere04g0688 185 ProSiteProfiles EF-hand calcium-binding domain profile. 155 185 IPR002048 GO:0005509
Dere04g0688 185 SMART efh_1 159 185 IPR002048 GO:0005509
Dere04g0688 185 SMART efh_1 121 149 IPR002048 GO:0005509
Dere04g0688 185 ProSiteProfiles EF-hand calcium-binding domain profile. 117 152 IPR002048 GO:0005509
Dere04g0688 185 FunFam Calmodulin A 91 185 - -
Dere04g0688 185 PANTHER CALCIUM BINDING PROTEIN 54 184 - -
Dere04g0688 185 Gene3D - 37 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0688 Dere-ChrDere04 6814981 6815538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0688 94 184 EF-hand Containing Proteins AT4G20780 49.451 1.54e-17 74.7