Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0670 ATGGAGCTCAAAAATGAGAAGCTAGTTAGGTTTTACAATGATAGCAAAGAGAACCCTGAGCTTTCCTGGGAAAAGCCATTGTCAGTATACAAGGTACAGGCGGCCTTAAACCCAGAAGGCAAAATAGGAAGTGTTGATAAGAACAGAATTAATCTAAAAATTCCCTCATTTGGAAAGTTTAAGGTTTTCCCAGAAAACAATGAACCATGGAAGAAGAGAATTCTTGATCCTGGAAGTGACATATATTTGCAGTGGAACCGGGTTTTCCTTTGTTCTTGCATTCCAGCCCTATTTGTTGATCCACTGTTCTTCTACCTTCCCTCAGTGGCCAATGATGGAAAGTCATCATGTATGGCTACTGATTTGAATATTGGAATTGTTGTGACATGTTTCCGGACATTTGCTGATATTTTCTATCTGCTGAACATGCTCATTAAGTTCAGGACAGCTTATGTATCGCCAAGTTCAAGGGTTTTTGGCAGGGGTGAGCTAGTTATGGATCCAAGGTTGATTGCAAGGCGTTATTTGAGATCAGAATTCTTAATAGATCTTGTAGCTACACTGCCTCTTCCTCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCCGATCACACCAACAATGCTCTAGTACTGATTGTTCTGCTTCAATATGTCCCCAGATTATATTTGATTTTCCCGTTAAGTTCTCAGATTATCAAAGCCACTGGTCTAGTTACAAAGACGGCTTGGGCAGGAGCTGCTTATAATCTTTTACTTTACATGTTGGCTAGCCATGTGTTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGCATGCGACTTGTTGGAAATCAGAATGCAAAAACGAAAGTCTCCCAATAAAGTGTGATCTTAAATACTTGGATTGCCGCACTATAGACAATGATGATCGCATGAAGTGGGTAAACACTACTGCTGTGTTTGGTAACTGCAATCCAGACAATGACATCAGTTTCAAGTATGGCATTTTCGGAGCTGCAGTTGAAAATAACGTTATTTCCTCAGACTTTCTAGAGAAGTATCTCTATTGTCTATGGTGGGGCTTGCAGAACTTGAGTTCCTATGGCCAGAGTTTAAGTACAAGCACGTTCGTTTGGGAAACTGCATTTGCAATACTCATAGCTATACTGGGTCTAGTTTTGTTTGCCCATTTAATTGGAAACATGCAGACATATTTGCAATCTATTACTGTGAGGCTTGAGGAGTGGAGGCTCAAGCGACGTGACACCGAAGAATGGATGAGACACCGCCAGCTCCCACAAAATCTGAGAGAGCGTGTTCGAAGATTTGTTCAGTACAAGTGGCTTGCAACACGAGGTGTTGATGAAGAATCTATCTTGCGAGGCCTTCCCACAGACCTACGCAGAGATATCCAACGCCACCTTTGCTTGGACCTCGTTCGACGAGTCCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGAGATTGGTATCATCCTTGAGTACTCTAGGCACATATATCGTCCGGGAAGGAGATCCAGTGACAGAGATGCTTTTCATCATAAGAGGAAGACTTGAAAGCTCAACTACAAATGGAGGCAGGACAGGTTTCTTTAACTCTATCACATTGAGACCTGGTGATTTCTGTGGAGAAGAGCTGTTAGCATGGGCATTGCTTCCAAAATCTACTCTCAACTTGCCATCTTCTACTAGAACAGTGAAAGCCCTTGTGGAAGTGGAAGCCTTTGCACTAAGAGCAGAAGATCTTAAGTTTGTGGCTAATCAGTTTCGGCGTCTCCACAGCAAGAAGTTGCAGCACACCTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCAGCCTGCTTCATTCAGGCTGCTTGGAGAAGGTACAAGAAGAGGATGCTGGCAATGAGCCTTAGCTTGAGGGAATACCAGCCATTTAATTATGATGAACAGGTCACTGATGAAGTGGGACATGAGGAGGAAGAGCATAGTGCTGTGACCTCAAGTGCTAACTCACTGGGTGTCACCATACTTGCCTCAAGATTTGCTGCAAACACAAGGAGAGGAGCTCAGAGGATTAAGGATGTTGGGATGCCTAAGTTGAAAAAGCCTGAAGAGCCAGACTTCTCGGTGGAGGCAGAGGATGATTAG 2163 0.4327 MELKNEKLVRFYNDSKENPELSWEKPLSVYKVQAALNPEGKIGSVDKNRINLKIPSFGKFKVFPENNEPWKKRILDPGSDIYLQWNRVFLCSCIPALFVDPLFFYLPSVANDGKSSCMATDLNIGIVVTCFRTFADIFYLLNMLIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFLIDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGLVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECKNESLPIKCDLKYLDCRTIDNDDRMKWVNTTAVFGNCNPDNDISFKYGIFGAAVENNVISSDFLEKYLYCLWWGLQNLSSYGQSLSTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQNLRERVRRFVQYKWLATRGVDEESILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRYKKRMLAMSLSLREYQPFNYDEQVTDEVGHEEEEHSAVTSSANSLGVTILASRFAANTRRGAQRIKDVGMPKLKKPEEPDFSVEAEDD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0670 720 Pfam Ion transport protein 85 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere04g0670 720 ProSiteProfiles cAMP/cGMP binding motif profile. 483 566 IPR000595 -
Dere04g0670 720 MobiDBLite consensus disorder prediction 697 713 - -
Dere04g0670 720 Gene3D Jelly Rolls 481 601 IPR014710 -
Dere04g0670 720 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
Dere04g0670 720 CDD CAP_ED 483 614 IPR000595 -
Dere04g0670 720 Pfam Cyclic nucleotide-binding domain 507 594 IPR000595 -
Dere04g0670 720 PRINTS EAG/ELK/ERG potassium channel family signature 378 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g0670 720 PRINTS EAG/ELK/ERG potassium channel family signature 446 453 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g0670 720 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g0670 720 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g0670 720 PRINTS EAG/ELK/ERG potassium channel family signature 396 405 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g0670 720 Gene3D Helix hairpin bin 411 474 - -
Dere04g0670 720 MobiDBLite consensus disorder prediction 697 720 - -
Dere04g0670 720 SUPERFAMILY Voltage-gated potassium channels 77 405 - -
Dere04g0670 720 SMART cnmp_10 483 614 IPR000595 -
Dere04g0670 720 Gene3D - 115 409 - -
Dere04g0670 720 SUPERFAMILY cAMP-binding domain-like 413 605 IPR018490 -
Dere04g0670 720 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
Dere04g0670 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 66 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0670 Dere-ChrDere04 6665008 6668124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0670 10 716 Ion Channels AT2G24610 71.727 0.0 1056