Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0660 ATGGTAGTCTCAAGGAAGGGGATGCCTCATGTATTCAGAGATGCTGCTAACACTAGGGATCAAAATGGTCAGTTATGTAGCCGACTTAATTGCAGTAGCAGAGTCCACTCTCCTAAAGGTGCTCAGAGTGGTTCTTCTAGAAAAGGCAAATCTTTGAGGCCTTCAATCCAATCCTCCTTAAGTGGCAAGGAAGCAATGGGAAGTTCCTCTAGATCTTCGTCGGGAACTAGTAATCCAAGAAGGTCCCTTGCAGAGCCTCGGAAAACAACATCCTCCAGGTTAGATACGGATTCATCTGAAACTAGTAGTGCACAGGATGAACCTGAAGTTTCAGTTCTCATCCCTCCATGTGCAACTTTTCAAAGTCAGCTTCAAGCTGAATCAGAACACGCAGAGTCTGATAATGTCATGCTGATGGAAGTAGCAAACACTAGTTTTGTATCAAATACAAGATCACGGAGGAATTTTCATCAACCTGGATTGCGTGGTCAAGACACTAAAAGCATTGGCCCAGTGACTCGTGCTGGTACCAGCAGATATGAGTTGAGGAACCTCAGGTGTAACTCTACAACTGATGTTGTCCCTGCAGGTTGTTCATCGGCAGATTCAACCATCAACAGAAGGAAGGGTATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCCACTGCTAGAGGGAAGAAGATGAGTGGGTCTCTATTGGAAGGACGGAATTCTGGTTCTGGAAGTGGCATATCTATTTCTGATTCAAGAAGATTAAGAAATATTCCTCCCCACGGGGACAACAACAGTGCATCAGTTAGACCTCGAAGATCTATAAGGGGTGATGCTAGGGGAAGGCTTTCTAGCCATGGAAATGAAAACCCTGTGTCACCCAATGAATCTCCAGTTGTGATACCACCTTTGCCTTATTCTGATGACCTTAATGCTCCTGGTTTGTCTCATCAAACTTCTGCAGAGTCTACTGTAATTCGATTAAGCTCTTATGGTAGACCAGGTACAAGTAGGGTTATGCCCACTTCTCCTGCTGAATATGACATAACTCGTCCTCTAGTAAATCGGGATAGACTTCGATACTACAACATGGATGGCATTGCCGAGGTATTATTGGCACTTGAGAGGATCGAACAAGATGAAGAGCTAACACAAGAGGAAATTCTTTTACTGGAGACAAACTTTCTCCTTAATGGACTAAACTTCTATGATCAACATAGAGACATGCGACTGGATATTGATAATATGTCATATGAGGAACTATTAGCCCTGGAAGAGAGAATGGGAACTGTGAGCACAGCTTTAACAGAAGAAGCACTGTCAGAATGCCTTAAGATAAGCATCTATCACTCTGCACCTTCTGATGATGCAGCTGAGAGTTGCAATGAAAGTAAGGATGATATCAAATGCAGCATCTGCCAGGAGGAATATGTGATCGGAGATGAATTGGGAAGTCTGCAGTGTGAGCATGGATATCATGTGGCTTGCGTACAACATTGGCTGCGGCTGAAGAACTGGTGCCCTATATGCAAAGCATCAGCGGCACCTTCAAATTCATCTTCACCGTCTTAA 1569 0.4372 MVVSRKGMPHVFRDAANTRDQNGQLCSRLNCSSRVHSPKGAQSGSSRKGKSLRPSIQSSLSGKEAMGSSSRSSSGTSNPRRSLAEPRKTTSSRLDTDSSETSSAQDEPEVSVLIPPCATFQSQLQAESEHAESDNVMLMEVANTSFVSNTRSRRNFHQPGLRGQDTKSIGPVTRAGTSRYELRNLRCNSTTDVVPAGCSSADSTINRRKGMIKKRNCEGESSSTARGKKMSGSLLEGRNSGSGSGISISDSRRLRNIPPHGDNNSASVRPRRSIRGDARGRLSSHGNENPVSPNESPVVIPPLPYSDDLNAPGLSHQTSAESTVIRLSSYGRPGTSRVMPTSPAEYDITRPLVNRDRLRYYNMDGIAEVLLALERIEQDEELTQEEILLLETNFLLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTALTEEALSECLKISIYHSAPSDDAAESCNESKDDIKCSICQEEYVIGDELGSLQCEHGYHVACVQHWLRLKNWCPICKASAAPSNSSSPS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0660 522 Coils Coil 366 393 - -
Dere04g0660 522 SMART ring_2 469 509 IPR001841 -
Dere04g0660 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 515 IPR013083 -
Dere04g0660 522 MobiDBLite consensus disorder prediction 1 20 - -
Dere04g0660 522 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 58 514 IPR045191 GO:0061630
Dere04g0660 522 ProSiteProfiles Zinc finger RING-type profile. 469 510 IPR001841 -
Dere04g0660 522 SUPERFAMILY RING/U-box 464 513 - -
Dere04g0660 522 MobiDBLite consensus disorder prediction 153 172 - -
Dere04g0660 522 MobiDBLite consensus disorder prediction 210 298 - -
Dere04g0660 522 FunFam E3 ubiquitin-protein ligase arkadia 431 515 - -
Dere04g0660 522 Pfam Ring finger domain 468 510 IPR001841 -
Dere04g0660 522 MobiDBLite consensus disorder prediction 223 251 - -
Dere04g0660 522 MobiDBLite consensus disorder prediction 29 85 - -
Dere04g0660 522 MobiDBLite consensus disorder prediction 29 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0660 Dere-ChrDere04 6577838 6580305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0660 366 513 C3H Transcription Factor Family AT2G15530 42.953 6.36e-34 134