Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0652 ATGCCGGGATTGACATGCAACGCTTGCAACAAAGAATTCAACGACGATGCAGAACAAAAGCTTCATTATAAGTCCGAGTGGCATCGCTACAATCTCAAGCGCAAGGTGGCTGGGGTCCCCGGGGTGACAGAAGCACTATTTCTGGCTAGACAATCTGCAGCTGCTCGAGAGAAAGATAAGTCGAGTGAAACCCCCATGCTCTATAGTTGTGGCCTTTGTGGCAAAGGTTATAAAAGTCCTAAGGCTCATGCTGAGCATCTCAAATCCCGTGGTCATTTGATGCGGGCTTCTCAAGGAAGTAGTAACTCAGATGAGAAGGCAATAATCAAGCCGCTTCCACAGCGTATTGTGAATAGACCTCCTCCCATGAGAGAGGTAGACAATGCTGAAAGTGAAGGAAGTGAAGATGAATGGGAGGAGGTTGATCCCGAAGATGATTTAGTTAATGATGCTGCAACGTCCTTGACTGATTTGAATGTGAACAAGCATGTTGACAATGTTGATATGGATGAAGACAATGATAATTTTGAGGATTTGGATTCATCGTGTTGCTTTATGTGTGATCAGAAGCATGATACTATAGAAAGCTGCATTGTTCACATGCACAAGCAGCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTGCTCACCTATCTGGGCCTTAAGGTCATGAGGGACTACATGTGTCTATACTGCAATGATAGATGCCATCCTTTCAGCAGCCTGGAGGCAGTTAGGAAACACATGACAGCAAAAAGTCACTGTAAAGTGCATTATGGTGATGACGATGATGATGAGGAAGTAGAGTTGGAAGAATTCTATGATTATAGCAGCAGTTATGTCGACGAGCAAGGCAAGCAGCTGGTTGCATCAGGTGATGCAGCCAACAATATAGAACTTGGTAGTGGTGGGTTAGAGCTTGTTATCACTAAGAAATCTAAGGATGGAATATCAACCAAAACACTTGGTTCTCGTGAATTTTTGCGATATTATCGTCAAAAACCTCGCCCATCACCATCATATAACATGGCTATTACTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTGGCCACTGTCCAATCAAGGGAGCATTTGGTGAGGATGAAAGTACTGAAGGAAATGAACAGGTCCGGTGTAGAGACCATGCGTACTAAAATCGGGATGAAAAGTAATGTCATCCGGAACCTGCCAAAGAATGTCCCATATTAG 1233 0.4404 MPGLTCNACNKEFNDDAEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSAAAREKDKSSETPMLYSCGLCGKGYKSPKAHAEHLKSRGHLMRASQGSSNSDEKAIIKPLPQRIVNRPPPMREVDNAESEGSEDEWEEVDPEDDLVNDAATSLTDLNVNKHVDNVDMDEDNDNFEDLDSSCCFMCDQKHDTIESCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVMRDYMCLYCNDRCHPFSSLEAVRKHMTAKSHCKVHYGDDDDDEEVELEEFYDYSSSYVDEQGKQLVASGDAANNIELGSGGLELVITKKSKDGISTKTLGSREFLRYYRQKPRPSPSYNMAITAALASRYRSMGLATVQSREHLVRMKVLKEMNRSGVETMRTKIGMKSNVIRNLPKNVPY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0652 410 SMART c2h2final6 68 92 IPR013087 -
Dere04g0652 410 SMART c2h2final6 233 260 IPR013087 -
Dere04g0652 410 SMART c2h2final6 182 205 IPR013087 -
Dere04g0652 410 SMART c2h2final6 4 28 IPR013087 -
Dere04g0652 410 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Dere04g0652 410 Pfam C2H2 type zinc-finger (2 copies) 184 285 IPR041661 -
Dere04g0652 410 Pfam Zinc-finger of C2H2 type 68 92 - -
Dere04g0652 410 PANTHER ZINC FINGER PROTEIN 622 2 409 IPR040025 -
Dere04g0652 410 SUPERFAMILY beta-beta-alpha zinc fingers 170 244 IPR036236 -
Dere04g0652 410 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Dere04g0652 410 MobiDBLite consensus disorder prediction 83 143 - -
Dere04g0652 410 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Dere04g0652 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0652 Dere-ChrDere04 6477561 6479863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0652 1 410 C2H2 Transcription Factor Family AT4G31420 64.423 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g0652 zf-C2H2_2 1.3e-25 CL0361