Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere04g0622 | ATGGAACTTCTCTCACCAAAACTATATCTTGAAGGTTTATCCGTCACTTGCCCATTGTTGATGGAGCAGCCAGGTCCCTTGAACAGCAATGAGCTTGTTATTGACATAGCTGGGAGCAATGAAGCTTCCACATCTACCTCTCCTCATGATAGACATTTTCATGGCGAAGGTACATCACAACATGAAGAAAGACCTAGTAGTACAAGATTACCTGCTTCTCTGCCTTCGGTTCCTGTTGTATCTAATGGTACAAATTCTAGGAATTCTTCATTTGTAAGACGAGGGGATACCCGTCGGCAAAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCACAGTAAGCCAGATTATTGCATCTATTGTTGTTTTGTCTTTGTCAAGGCATGAGCATCCACGCACTCCATTGTTTGCATGGATTGTGGGTTATGCATCTGGATGTGTTGCTACTCTCCCTCTGCTTTATTGGAGATATTATCATCATAACCAGATTCGGGAGCAAAGTTCATCTCAACCACGTCAAGCTTCTCCTCGAGTTAATATTTCTTCAGGAACACTTCTTTCTGTTTCCAGAATTAATGGAGGAGAAGATGATCAGGCTGCCGCTCCATCCTCTAGAAGCAGTCAAGCTCCAGGATTGATGAATATGAGACTGAAGGTGCAAGTGGAATACTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGCAATGTATGGATCTTTGGGGGACACTCTTCTGCTAATGAGGCTCCTAACTTGTACAGGTTATGTATCGTGTTTCTTACCTTCAGCTGTATTGGCTATGCTATGCCTTTCATTCTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACACAGACAAGAGGGGCAACCTCTGAATCCATTAATGCGCTGCCAACTTACAAGTTCAAGATGAAGAAACGTAAAAGCAGTGATGAAAGCAACTCAAATATTTGTGAAGGTGGAATTGTGGCTGCAGGAACTGGACAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCTTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAGTTGCCTTGTTCCCATCTTTTTCATAAAGAGTGTGTAGACAAGTGGCTGAAGATAAATGCATTATGCCCTCTTTGCAAAAGTGAGGTTGGTGGGAACCTAACAGGACCAGTATCCGGTGAAGGTGCTAACCAACAAAGGGGTGAGAGCAGAATTGGAAATAGCTCAGTCAATAGCATAGTATAA | 1308 | 0.4297 | MELLSPKLYLEGLSVTCPLLMEQPGPLNSNELVIDIAGSNEASTSTSPHDRHFHGEGTSQHEERPSSTRLPASLPSVPVVSNGTNSRNSSFVRRGDTRRQRSPLNSGLWISIELVLTVSQIIASIVVLSLSRHEHPRTPLFAWIVGYASGCVATLPLLYWRYYHHNQIREQSSSQPRQASPRVNISSGTLLSVSRINGGEDDQAAAPSSRSSQAPGLMNMRLKVQVEYFKMALDCFFAVWFVVGNVWIFGGHSSANEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINALPTYKFKMKKRKSSDESNSNICEGGIVAAGTGQERVISGEDAVCCICLAKYENNDELRELPCSHLFHKECVDKWLKINALCPLCKSEVGGNLTGPVSGEGANQQRGESRIGNSSVNSIV | 435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere04g0622 | 435 | ProSiteProfiles | Zinc finger RING-type profile. | 360 | 401 | IPR001841 | - | |
| Dere04g0622 | 435 | MobiDBLite | consensus disorder prediction | 412 | 435 | - | - | |
| Dere04g0622 | 435 | MobiDBLite | consensus disorder prediction | 47 | 63 | - | - | |
| Dere04g0622 | 435 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 344 | 410 | IPR013083 | - | |
| Dere04g0622 | 435 | MobiDBLite | consensus disorder prediction | 64 | 91 | - | - | |
| Dere04g0622 | 435 | SMART | ring_2 | 360 | 400 | IPR001841 | - | |
| Dere04g0622 | 435 | SUPERFAMILY | RING/U-box | 352 | 405 | - | - | |
| Dere04g0622 | 435 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 21 | 404 | - | - | |
| Dere04g0622 | 435 | FunFam | E3 ubiquitin-protein ligase | 343 | 409 | - | - | |
| Dere04g0622 | 435 | MobiDBLite | consensus disorder prediction | 411 | 435 | - | - | |
| Dere04g0622 | 435 | MobiDBLite | consensus disorder prediction | 41 | 102 | - | - | |
| Dere04g0622 | 435 | Pfam | Ring finger domain | 360 | 401 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere04g0622 | Dere-ChrDere04 | 6225203 | 6229466 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere04g0622 | 18 | 405 | C3H Transcription Factor Family | AT1G80400 | 52.010 | 1.86e-141 | 409 |