Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0607 ATGGTAATTCGGTCTTTGAAGAGCAGGCATGAACAAAATTTTGATTTGAAGCAGTCAGGTTGCTTTTCTTCTAGGCAAACAAAAATGGATAACGAAAGTACAGTTTATGCCAAATATGAAGAGCGTCCAGTCCGAATCACTAGAGCGAGAGCCAGAGCCTTGGGAGGGATGCCTACCTCCTCAAGGCCATCTTTTACACAAGAACAGAAGCACGTCAATCAAACAAAGTCCAAAAGAGCAGCGTCTGATGAGAACAAAGCTTCTGTAGTTACTACCGCTGGTCTTCAGCATAAGAGGAGGGCAGTGCTTATAGATTTGACCAACATCTGTGAAAAATCATATGATAAATGTATTGATGCATCAAATTTTCAGGCAAAAGGAGGTTATATGAAGAAAAACACAAACCCAGTTTTAGTTGTCTCCTCAGAAGTTTCATCAACACAAGAGGACGTTAAATCAAAGTTAGCTGACGCATTATCCAATATAAGGATGGTAGAATCACATAAAATGACTGGTGCATCGAAGTTGGAAGACAAAAGTTCACCACAACGATGCATGTCCAATAGTTCAAGAGATAGTCTTTCAGCAGATCCCATGCTTTCAATACAAGACTCTGTGATGTCTGATGAAATCCTGAGCGCTCCAGATAAAGTGGATCAAATATCCTTTGTCGAGAAACTAAGAGCCTCAGATGGCTTGGGCATTGTGGACATTGATTCAGAGTTAAAGGATTCTCAACTTTGGAGTCCATATGCCCCAGATATATACAAAAACATATGTGTCACAGAGCTTGAAAGAAGACCATTAACTGATTATATGGAGAAGTTGCAGCGAGATATCAATCCAAGCATGCGAGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAACTGGTTCCAGACACTCTTTACCTCACTGTGAATCTCATTGATCGGTTTCTCTCTACAACTTTAAGTACGAAACAAAGGCTTCAACTTGTTGGAGTTACTTGCATGCTGATTGCGTCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTTATCACAGATAATACATACACGAGAGATGAGGTATTGAAAATGGAGAGCGAGATTTTAAATCTTTTGCATTTTCAATTATCTGTTCCCACCACCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCGTCCAAGGTTCCTTGTGTTGAATTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTCGTTGAATACAGCTTCCTGAAGTTCCTACCTTCCCTTATTGCTGCATCTGCTCTCTTCCTTGCTAGATGGACGCTCAACCACTCAGAACACCCATGGAATCTGACTCTGGAGCACTGCACAAATTACAAAACATCAGAGCTTAAAACTACTGTTCTTGCCCTGGAAGAGTTACAGCTCAATACCAAATCATGTTCCCTGAATGCAATACGTGAAAAATATAGACTTCAGAAGTTCAAGCGTGTGGCAGCATTGTCTCCTAAACCTGTGCTTTCAGTCTTCGAGACTCAAATGTAA 1551 0.4055 MVIRSLKSRHEQNFDLKQSGCFSSRQTKMDNESTVYAKYEERPVRITRARARALGGMPTSSRPSFTQEQKHVNQTKSKRAASDENKASVVTTAGLQHKRRAVLIDLTNICEKSYDKCIDASNFQAKGGYMKKNTNPVLVVSSEVSSTQEDVKSKLADALSNIRMVESHKMTGASKLEDKSSPQRCMSNSSRDSLSADPMLSIQDSVMSDEILSAPDKVDQISFVEKLRASDGLGIVDIDSELKDSQLWSPYAPDIYKNICVTELERRPLTDYMEKLQRDINPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTTLSTKQRLQLVGVTCMLIASKYEEICAPRVEEFCFITDNTYTRDEVLKMESEILNLLHFQLSVPTTKTFLRRFIQAAQSSSKVPCVELEFLANYLAELTLVEYSFLKFLPSLIAASALFLARWTLNHSEHPWNLTLEHCTNYKTSELKTTVLALEELQLNTKSCSLNAIREKYRLQKFKRVAALSPKPVLSVFETQM 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0607 516 Pfam Cyclin, N-terminal domain 254 381 IPR006671 -
Dere04g0607 516 SUPERFAMILY Cyclin-like 382 506 IPR036915 -
Dere04g0607 516 SMART Cyclin_C_2 383 506 IPR004367 -
Dere04g0607 516 SMART cyclin_7 387 475 IPR013763 -
Dere04g0607 516 SMART cyclin_7 290 374 IPR013763 -
Dere04g0607 516 MobiDBLite consensus disorder prediction 54 85 - -
Dere04g0607 516 MobiDBLite consensus disorder prediction 170 194 - -
Dere04g0607 516 MobiDBLite consensus disorder prediction 176 194 - -
Dere04g0607 516 PIRSF Cyclin_A_B_D_E 57 515 IPR046965 GO:0016538|GO:0044772
Dere04g0607 516 Gene3D - 268 381 - -
Dere04g0607 516 Pfam Cyclin, C-terminal domain 383 505 IPR004367 -
Dere04g0607 516 SUPERFAMILY Cyclin-like 244 380 IPR036915 -
Dere04g0607 516 CDD CYCLIN_AtCycA_like_rpt1 244 379 - -
Dere04g0607 516 ProSitePatterns Cyclins signature. 285 316 IPR006671 -
Dere04g0607 516 CDD CYCLIN_AtCycA-like_rpt2 383 497 - -
Dere04g0607 516 Gene3D - 254 502 - -
Dere04g0607 516 PANTHER CYCLINS 192 492 IPR039361 -
Dere04g0607 516 FunFam Cyclin A1 370 502 - -
Dere04g0607 516 FunFam Mitotic cyclin 6 268 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0607 Dere-ChrDere04 6060002 6064653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0607 23 512 Core Cell Cycle Gene Families AT5G25380 52.941 4.91e-159 457