Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0603 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGATCCCGTTGCCATTGATGCCCCTGGAGGATTTCTCTTCGAGTGGTGGTCAGTTTTCTGGGATATATTTATTGCCAGGACTAACGAGAAGCACTCAGAAGTTGCGGCATCTTATATTGAGACACAGTTAATTAAGGCAAGGGAACAACAACAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCCACAATCCCAGCAATCACAGCATCAGCAACAGCAGCAACAACAACAGCAGCACATGCAGATGCAGCAACTCTTCTTACAGAGGCATGCACAACAGCAGCAGCAACAACATCAGCAGCAGCAGCAACAGCAACAGCAACAGCAGCAGCAGCCACCACAACCACAGCAACAGCAGCAGCCACCTCCGCAACAACAGCAGAGAAGGGATGGGGCTCATCTCTTAAATGGCAGTACAAATGGATTAGTTGGAAATCCTAGCACTGCAAATGCAATGGCAACAAAGATGTATGAAGAAAGGTTAAAACTGCCCCTTCAGAGGGATTCTTTGGATGATGCAGCCATGAAGCAAAGATTTGGTGAAAACATGGGCCAAATTTTGGATCCAAACCATGCCTCAATAATGAAGTCAGCTGCAGCTTCTGGCCAGCCTTCGGGACAAGTTTTGCATGGTGCTGCTGGTGGGTTGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTAAATCCAAGAGCTGCAGGTCCAGAAGGATCATTAATAGGAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCACTCACGGATTTTGAACAACTACGCTCTGGTATTCTTCATCAACAAAAGCCTTTGCATCAACTTCAAATGTTCACACCACAGCATCAACAACAGCTTATGCTTGCGCAACAAAATTTGGCATCACCTGCTAGTGAGGATAGCAGAAGACTCAGAATGCTACTGAATGGTGGCAATAGGAATATGGGCCTAAGTAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGATATCAAATGTTGGATCACCTCTTCAAGCTGGTGGTCCTCTTTTGCCTCGCGGGGATACAGATGTGCTAATGAAGTTAAAATTGGCTCATATGCATCATCAACATCAACAGCAGCAGAGCAACAATCCACAGCAACAGCAACTTCAACAGCATGTTCTTTCAACTCAACAACCTCAGACTTCAAACCATAATATGCATCAGCTAGATAAAGTTGGGGGTGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCGAACTCCTTTAGAGGCAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAACAGCCTGTGTCTTCTTCAGGTCCTGCCAATAGTTCTGGAACAGCAAATACAGCAGGTCCATCTCCAAGTTCAGCACCCTCAACTCCCTCAACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGCAGTAGTTCTTCAAAGCCTCTCATTATGTTTGGCACTGATGGTACTGGGACTCTTACATCGCCATCAAATCAGTTGGCTGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTATCTCATGATGATGCAGACCCTAGAGATACTGTTCGTTGTATGGATGTAAGCAAAGGCTTCTCATTTTCTGAAGTAATTTTTGCACGAGCAAGCACAAGCAAGGTTGTATGCTGCCACTTCTCATCTGATGGGAAGTTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTACACGGATTCTTTGAAGCAAAAAACTACCCTTGAAGAACATTCATCTTTGATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCATTTGATAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGCTATACGCTTCGCACCTTTACAGGACATTCTGCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTAATTTGTTCTTGTGATGGGGATGGTGAGATACGATATTGGAGTATAACCAATGGCAGCTGTGCTAGAGTCTCAAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGAATGGGAAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTGGAGACACAAGTATGCCGATATTCATTACAGGGACATACAAAGCCAATACATTCTGTGTGCTGGGATCCTACAGGGGAGTTACTGGCATCTGTGAGTGAGGACTCAGTCAGGGTTTGGACTCTTGGGTCAGGGAGTGAAGGAGAATGTGTTCATGAGCTAAGCTGTAATGGCAATAAGTTTCACTCCTGTGTTTTCCATCCGACTTATTCTTCTTTGTTGGTGATTGGCTGTTACCAGTCTCTAGAGCTTTGGAATATGGCGGAGAACAAAACAATGACTCTGCCTGCTCATGAAGGTCTCATTGCTGCTTTGGCAGTTTCAACTGTAACTGGTTTGGTTGCTTCGGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAATAA 2685 0.4477 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQPQSQQSQHQQQQQQQQQHMQMQQLFLQRHAQQQQQQHQQQQQQQQQQQQQPPQPQQQQQPPPQQQQRRDGAHLLNGSTNGLVGNPSTANAMATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQILDPNHASIMKSAAASGQPSGQVLHGAAGGLSQQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLTDFEQLRSGILHQQKPLHQLQMFTPQHQQQLMLAQQNLASPASEDSRRLRMLLNGGNRNMGLSKDGLSNPVGDVISNVGSPLQAGGPLLPRGDTDVLMKLKLAHMHHQHQQQQSNNPQQQQLQQHVLSTQQPQTSNHNMHQLDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSSSSSKPLIMFGTDGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDADPRDTVRCMDVSKGFSFSEVIFARASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSITNGSCARVSKGGTAQMRFQPRMGRYLAAAAENVVSILDVETQVCRYSLQGHTKPIHSVCWDPTGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMAENKTMTLPAHEGLIAALAVSTVTGLVASASHDKFVKLWK 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0603 894 MobiDBLite consensus disorder prediction 466 526 - -
Dere04g0603 894 MobiDBLite consensus disorder prediction 417 543 - -
Dere04g0603 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 651 IPR001680 GO:0005515
Dere04g0603 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Dere04g0603 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 737 IPR001680 GO:0005515
Dere04g0603 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 817 IPR001680 GO:0005515
Dere04g0603 894 ProSitePatterns Trp-Asp (WD) repeats signature. 671 685 IPR019775 -
Dere04g0603 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 894 - -
Dere04g0603 894 FunFam Transcriptional corepressor LEUNIG 738 894 - -
Dere04g0603 894 MobiDBLite consensus disorder prediction 161 188 - -
Dere04g0603 894 Coils Coil 128 151 - -
Dere04g0603 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 733 - -
Dere04g0603 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 687 IPR001680 GO:0005515
Dere04g0603 894 MobiDBLite consensus disorder prediction 420 454 - -
Dere04g0603 894 Gene3D - 740 894 IPR015943 GO:0005515
Dere04g0603 894 Gene3D - 583 739 IPR015943 GO:0005515
Dere04g0603 894 CDD WD40 611 894 - -
Dere04g0603 894 SMART Lish 8 40 IPR006594 GO:0005515
Dere04g0603 894 SMART WD40_4 770 808 IPR001680 GO:0005515
Dere04g0603 894 SMART WD40_4 855 894 IPR001680 GO:0005515
Dere04g0603 894 SMART WD40_4 814 853 IPR001680 GO:0005515
Dere04g0603 894 SMART WD40_4 688 728 IPR001680 GO:0005515
Dere04g0603 894 SMART WD40_4 645 684 IPR001680 GO:0005515
Dere04g0603 894 SMART WD40_4 603 642 IPR001680 GO:0005515
Dere04g0603 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 894 IPR001680 GO:0005515
Dere04g0603 894 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Dere04g0603 894 MobiDBLite consensus disorder prediction 94 154 - -
Dere04g0603 894 Pfam LisH 10 36 IPR006594 GO:0005515
Dere04g0603 894 Pfam WD domain, G-beta repeat 773 807 IPR001680 GO:0005515
Dere04g0603 894 Pfam WD domain, G-beta repeat 858 894 IPR001680 GO:0005515
Dere04g0603 894 Pfam WD domain, G-beta repeat 616 641 IPR001680 GO:0005515
Dere04g0603 894 Pfam WD domain, G-beta repeat 649 684 IPR001680 GO:0005515
Dere04g0603 894 Pfam WD domain, G-beta repeat 691 728 IPR001680 GO:0005515
Dere04g0603 894 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 894 - -
Dere04g0603 894 SUPERFAMILY WD40 repeat-like 604 894 IPR036322 GO:0005515
Dere04g0603 894 MobiDBLite consensus disorder prediction 94 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0603 Dere-ChrDere04 6024307 6034687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0603 689 893 Miscellaneous Gene Families AT5G08390 25.238 3.82e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dere04g0603 WD40 0.26 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2122 05 31326074 31337305 Dere04g0603 04 6024307 6034687 CCT
Dere04g0603 04 6024307 6034687 Dere04g0603 04 6024307 6034687 ECH