Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0600 ATGAGCGCAATGGGGAGTAGCATGGATGTTTTCTCAACGTCTGAACGTGAAGACGATGAGGAAGCTCTGAAATGGTCAGCAATAGAGAGACTTCCGTCATATCTGCGCATAAGAAGGAGTATACTCGTTAATGCGGAAGGTAAAGCTAGAGAGGTCGATATCAAGCAACTAAGTTCAATAGAGAGAAAGGTTCTGTTAGAGAGACTCGTGAAGATAGCAGAAGAAGATAATGAGAAGTTCTTGTTGAAACTCAAGGAACGAATTAATCGAGTTGGACTTGAGATTCCAACAATTGAAGTTCGGTTTGAGCATATAAACGTTGAGGCACAAGTCTACGTTGGAAGCAGAGCGTTGCCTTCATTATTTAACTTCTTTGATCATGTATTAGAGGGATTCTTAAATTATATTCACATTATGCCAAGTTCAAAAAAAACACTACGCATCCTTCAGAATGTCAGTGGAATCATAAAGCCCAAAAGAATGACATTGCTTTTAGGGCCCCCAGGCTCCGGAAAGACCTCTCTGCTATTGGCTTTGGCTGGAAAGCTTGGTAACGATTTAAAATATTCTGGAAGAGTGACATACAATGGGTATGGGCTAGAAGAATTTGTACCACAGAGGACATCAGCTTATATAAGTCAGCATGATGTGCACATCGGAGAAATGACAGTGAGAGAAACACTAGACTTCTCAGCAAGATGCCAAGGAGTTGGGCAGAATTATGAGATGTTGGCAGAACTGCTAAGAAGAGAAGAGGAAGCAAAGATTAAACCAGATCCTGATATTGATGCCTACATGAAGGCAGCCGCACTTGTAGGGCAAGAGACATGCATGGTCACTGATTACATTCTTAAGATTTTGGGACTAGAAGTGTGTGCTGACGTTATGGTAGGAGATGGAATGATAAGAGGTATATCAGGTGGACAGAAGAAGCGAGTCACAACAGGGGAGATGTTGGTTGGACCTGTGAGAGTTTTGTTCATGGATGAGATATCAACTGGTTTGGACAGTTCAACAACTTTTCAAATAATTAATTCAATCCGACAATCCATCCATATTCTCGATGAAACTGCACTTGTGTCTCTCTTACAGCCAGCACCAGAAACTTATGAGTTATTTGATGATATTATACTTCTCACGGATGGCCAAATTGTGTACCAAGGTCCCAAAGAAAATGTGCTTGAGTTCTTTGAATCCATGGGCTTCAAGTGTCCAGAAAGAAAAGGAGTTGCTGACTTCTTACAAGAAGTGACATCAAGAAAAGATCAATGGCAATACTGGGCACGTAAAGATGAACCCTACAGTTTTGTCACGGTAGAGGATTTTGTTGAAGCCTTCCAGTCATTTCATATCGGTCTAAATCTTGGAGATGAGTTGGCCAATCCTTTTGACAAGTCTAAATGCCATCCAGCTGCCTTGACCAGAAACAAATATGGTGTTGGCAAGAAGGAGCTGCTGGGAGCTTGTTTTAGCAGAGAATTTCTGCTTATGAAGAGAAATTCCTTTGTCTATGTATTCAAAGCCACCCAACTAACTTGTATAGCTGTCATGACTGCTACATTATTTCTACGAACTAACATGCATCGGGATACCGTGGCGGATGGAGGAACTTATACGGGCGCTATGTTCTTTGCTGTCATTGCAGCTATGTTCAATGGAATATCAGAGCTAAATATGACCATCATGAAACTTCCCATCTTTTACAAGCAAAGAGACCTTACCTTTTATCCTTCATGGGCTTATTCTCTACCACCATGGATACTCAAAATACCAATAACCCTTATAGAAGTGGCCATTTGGGAAGGCATCACCTATTATGGCATCGACTTTGATCCAGATATTGGAAGGTTCTTTAAGCAGTACTTCCTTATTTTGTGTATTAACCAGATGGCATCTGCACTTTTTCGGTTGATGGCAGCACTAGGAAGGGATGTAATAGTTGCAAACACTGTTGGATCATTCGCTTTACTTCTAGTTATGGTTTTGGGGGGTTTTGTGATTTCACGAGATAATGTACACAAATGGCTCCTGTGGGGTTATTGGTCCTCCCCATTAATGTATGGACAGAATGCTATTGCTGTGAATGAACTTCTCGGGAATAGTTGGAAGAAGGTTATTCCGAATACCAACGAGACATTAGGAGTTTTGGTATTAAAATCCCGCGGGTTTTTCCCAAAAGCTTATTGGTATTGGATTGGACTGGGAGCTTTGATTGGTTATACCTTTCTTTTTAATTTCCTCTTCACCTTGGCTTTGCAATATCTCAATCCACTCAGAAAGGCTCAAGCAGGGCCGACCCAAGAGAAATTGCTCGAGAGAAATGCTTCCAAAACTGGAGAGTTCATTGACCATTTGACAGCAGGAAAGAGCGCTTCTGATGACAATTCAGAAACAAAGATTGAAGAAGTAGGTCTATCGTCTAGATCATTTTCTGGACCAAGAGGTGGTAAAAAGGGTATGGTTCTTCCAATTCAACATCTGTCTCTCACTTTTGATGAGCTAAGATATTCTATCGACATGCCACAGGAAATGAAAAATCAACGTGTTTTGGAAGATCATCTCGTACTTTTAAAGGGTGTGAGCGGTGCCTTTAGACCTGGAGTACTAACCGCTCTAATGGGCGTAAGTGGTGCTGGCAAGACTACTCTAATGGATGTTTTAGCTGGTAGGAAAACTAGTGGTTATATTGAAGGAAGCATCACAATCTCTGGGTACCCTAAGAAGCAAGAAACTTTTACTCGCATATCAGGATACTGTGAACAATTCGATATCCACTCACCCTATCTTACCGTCTATGAATCTTTGCTATTCTCTGCATGGCTTCGGTTACCCCTTGAAGTTGATAATGCAACTAGAATGTTGTTCATAGAGGAAGTTATGGAGCTAGTGGAGCTTAACTCATTAAGGGAAGCACTGGTTGGGTTGCCAGGCGAGACTGGACTTTCAACTGAGCAACGCAAGAGGCTTACAATTGCAGTTGAACTTGTAGCCAACCCATCAATAATATTCATGGATGAGCCAACCTCTGGTCTCGATGCTAGAGCAGCTGCAATTGTGATGAGAACTGTGAGGAATACTGTGGACACAGGACGAACTGTGGTTTGCACTATCCACCAGCCAAGCATCGATATATTTGATGCCTTTGACGAGCTGCTACTTCTGAAAATGGGAGGGGAACAGATATATGCTGGTCCATTAGGCCGCCACTGTTCCCATTTGATCCAGTACTTTCAGGCTATTCATGGGGTTCCTAAGATTAAAGATGGTTATAATCCTGCAACCTGGATGCTGGAAGTGACATCAGCAGGAACGGAAGCTAGCCTGAACATTGACTTTACTAATGTGTACCGAAACTCAGAACTCTACCGGAGAAATAAACAATTCATCAAAGAGCTTAGTACACCTCCTCAGGATTCAAAAGATCTCTACTTTGCCAGTCAATATTCACGACCTTTCCTCAATCAATGCATAACTTGCCTATGGAAACAACATTTGTCATATTGGCGCAACACATCATATACTGCAGTGAGACTACTATTTACAGCAGTCATAGCTTTGCTGTTTGGGATTATTTTTTGGGACATTGGCTCGAAAAGGAGAAGGGAGCAAGATCTTTTTAATGCAATGGGTTCAATGTATGCTGCTGTTACCTTCATTGGGGTACAAAATGGTTGCTCAGTGCAGCCCATTATAGCAGTTGAGAGAACAGTCTTCTACAGAGAAAAAGCTGCTGGAATGTATTCAGCTTTGCCATATGCTCTTGCACAGGTTATTGTGGAGCTTCCTCACATCTTGATCCAGACTCTGATATATGGGGTTATAGTGTATGCCATGATGGGATTTGAGTGGACATCAACCAAGTTCTTGTGGTATGTCTTCTTCATGTACTTCACCCTTTTATACTATACATTCTATGGCATGATGACCATGGCTATTACTCCCAACTGCCACATTGCCATGGTACTGTCGAGTGCCTTCTACGCAATATGGAACCTTTTCTCAGGCTTTGTCATTCCCTTATCGAGAATACCCATATGGTGGCAATGGTACTATTGGATTTGCCCTGTTGCTTGGACCTTGTATGGGTTAATTGCTTCCCAATACGGAAAAATAACAGAGATATTAGAGTCAGGTCAAACAGTCGAAGACTTTGTAAAGGGTTATTTCGGGTTCAAACATGAATTCGTGGGAGTTGTAGCAGCTGTGGTGGCCGGGTTCTCAGTGCTGTTCGCACTCATTTTCGCCTTCGGCATCAAGGCATTTAACTTCCAAAAACGATGA 4281 0.4198 MSAMGSSMDVFSTSEREDDEEALKWSAIERLPSYLRIRRSILVNAEGKAREVDIKQLSSIERKVLLERLVKIAEEDNEKFLLKLKERINRVGLEIPTIEVRFEHINVEAQVYVGSRALPSLFNFFDHVLEGFLNYIHIMPSSKKTLRILQNVSGIIKPKRMTLLLGPPGSGKTSLLLALAGKLGNDLKYSGRVTYNGYGLEEFVPQRTSAYISQHDVHIGEMTVRETLDFSARCQGVGQNYEMLAELLRREEEAKIKPDPDIDAYMKAAALVGQETCMVTDYILKILGLEVCADVMVGDGMIRGISGGQKKRVTTGEMLVGPVRVLFMDEISTGLDSSTTFQIINSIRQSIHILDETALVSLLQPAPETYELFDDIILLTDGQIVYQGPKENVLEFFESMGFKCPERKGVADFLQEVTSRKDQWQYWARKDEPYSFVTVEDFVEAFQSFHIGLNLGDELANPFDKSKCHPAALTRNKYGVGKKELLGACFSREFLLMKRNSFVYVFKATQLTCIAVMTATLFLRTNMHRDTVADGGTYTGAMFFAVIAAMFNGISELNMTIMKLPIFYKQRDLTFYPSWAYSLPPWILKIPITLIEVAIWEGITYYGIDFDPDIGRFFKQYFLILCINQMASALFRLMAALGRDVIVANTVGSFALLLVMVLGGFVISRDNVHKWLLWGYWSSPLMYGQNAIAVNELLGNSWKKVIPNTNETLGVLVLKSRGFFPKAYWYWIGLGALIGYTFLFNFLFTLALQYLNPLRKAQAGPTQEKLLERNASKTGEFIDHLTAGKSASDDNSETKIEEVGLSSRSFSGPRGGKKGMVLPIQHLSLTFDELRYSIDMPQEMKNQRVLEDHLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYIEGSITISGYPKKQETFTRISGYCEQFDIHSPYLTVYESLLFSAWLRLPLEVDNATRMLFIEEVMELVELNSLREALVGLPGETGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKMGGEQIYAGPLGRHCSHLIQYFQAIHGVPKIKDGYNPATWMLEVTSAGTEASLNIDFTNVYRNSELYRRNKQFIKELSTPPQDSKDLYFASQYSRPFLNQCITCLWKQHLSYWRNTSYTAVRLLFTAVIALLFGIIFWDIGSKRRREQDLFNAMGSMYAAVTFIGVQNGCSVQPIIAVERTVFYREKAAGMYSALPYALAQVIVELPHILIQTLIYGVIVYAMMGFEWTSTKFLWYVFFMYFTLLYYTFYGMMTMAITPNCHIAMVLSSAFYAIWNLFSGFVIPLSRIPIWWQWYYWICPVAWTLYGLIASQYGKITEILESGQTVEDFVKGYFGFKHEFVGVVAAVVAGFSVLFALIFAFGIKAFNFQKR 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0600 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 406 IPR027417 -
Dere04g0600 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1066 IPR027417 -
Dere04g0600 1426 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 7 1426 - -
Dere04g0600 1426 FunFam ABC transporter G family member 40 843 1073 - -
Dere04g0600 1426 Gene3D - 135 437 IPR027417 -
Dere04g0600 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 829 1081 IPR003439 GO:0005524
Dere04g0600 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 133 406 IPR003439 GO:0005524
Dere04g0600 1426 Pfam Plant PDR ABC transporter associated 702 763 IPR013581 -
Dere04g0600 1426 Pfam ABC-2 type transporter 364 414 IPR043926 GO:0140359
Dere04g0600 1426 Pfam ABC transporter 149 331 IPR003439 GO:0005524
Dere04g0600 1426 CDD ABCG_PDR_domain2 826 1064 IPR034003 -
Dere04g0600 1426 Gene3D - 843 1077 IPR027417 -
Dere04g0600 1426 Pfam ABC-transporter N-terminal 73 124 IPR029481 -
Dere04g0600 1426 SMART AAA_5 158 383 IPR003593 GO:0016887
Dere04g0600 1426 SMART AAA_5 866 1067 IPR003593 GO:0016887
Dere04g0600 1426 Pfam ABC-2 type transporter 485 696 IPR013525 GO:0016020|GO:0140359
Dere04g0600 1426 Pfam ABC-2 type transporter 1155 1368 IPR013525 GO:0016020|GO:0140359
Dere04g0600 1426 FunFam ABC transporter G family member 34 136 440 - -
Dere04g0600 1426 Pfam ABC transporter 857 1009 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0600 Dere-ChrDere04 5980122 5987894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0600 865 1041 Calmodulin-binding Proteins AT2G36910 26.486 8.87e-06 48.5