Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0598 ATGGGCTTGGGGAGAAAGTTGGAATCTCGAAGAACTAATCATCCTTGATCCGATCACACAAGCAAAACTTCTCTCAATCGATCATCACGGTTTGCAGACACAATGTCTAGCTCTGCGATGTTGGGTGATTCGAGCTCCTGGTCTAGGGCGCTGGTGAAGATATCTCCTTATACGTTCTCCGCCGTTGGCATCGCCATCTCTATTGGTGTCTCTGTCCTCGGTGCCGCCTGGGGGATTTATATAACTGGAAGTAGCTTGATCGGTGCTGCAATCAAGGCTCCGCGAATTACTTCCAAGAATCTTATAAGTGTGATCTTCTGTGAAGCAGTTGCTATTTATGGTGTTATTGTGGCTATCATTTTACAAACGAAATTAGAGAGTGTTCCACCATCAAGAATTTATGAACCTGAGTCTCTGAGAGCTGGGTATGCAATTTTCGCCTCTGGAATCATCGTGGGCTTTGCAAATCTTGTTTGTGGGTTGTGTGTTGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCTCAGAACTCCTCACTTTTTGTGAAAATTCTTGTGATTGAGATTTTTGGTAGTGCGCTTGGGCTATTTGGAGTTATTGTGGGAATTATCATGTCAGCTCAAGCAACATGGCCCGCAAAAGTTTAG 648 0.4444 MGLGRKLESRRTNHPXSDHTSKTSLNRSSRFADTMSSSAMLGDSSSWSRALVKISPYTFSAVGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPPSRIYEPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0598 215 CDD ATP-synt_Vo_c_ATP6F_rpt2 141 205 - -
Dere04g0598 215 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 43 209 - -
Dere04g0598 215 MobiDBLite consensus disorder prediction 1 17 - -
Dere04g0598 215 CDD ATP-synt_Vo_c_ATP6F_rpt1 59 121 - -
Dere04g0598 215 FunFam V-type proton ATPase proteolipid subunit 57 212 - -
Dere04g0598 215 Gene3D - 57 212 IPR035921 -
Dere04g0598 215 PRINTS Vacuolar ATP synthase 16kDa subunit signature 184 207 IPR000245 GO:0033179|GO:0046961|GO:1902600
Dere04g0598 215 PRINTS Vacuolar ATP synthase 16kDa subunit signature 75 99 IPR000245 GO:0033179|GO:0046961|GO:1902600
Dere04g0598 215 PRINTS Vacuolar ATP synthase 16kDa subunit signature 101 125 IPR000245 GO:0033179|GO:0046961|GO:1902600
Dere04g0598 215 PRINTS Vacuolar ATP synthase 16kDa subunit signature 157 183 IPR000245 GO:0033179|GO:0046961|GO:1902600
Dere04g0598 215 MobiDBLite consensus disorder prediction 1 25 - -
Dere04g0598 215 Pfam ATP synthase subunit C 63 121 IPR002379 GO:0015078|GO:0033177|GO:1902600
Dere04g0598 215 Pfam ATP synthase subunit C 146 205 IPR002379 GO:0015078|GO:0033177|GO:1902600
Dere04g0598 215 SUPERFAMILY F1F0 ATP synthase subunit C 138 206 IPR035921 -
Dere04g0598 215 SUPERFAMILY F1F0 ATP synthase subunit C 55 124 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0598 Dere-ChrDere04 5959079 5963174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0598 9 214 Primary Pumps ATPases(2) AT2G25610 80.383 1.81e-110 314