Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0573 ATGCAAGCAACTGGTGGAATGGTGGCTGGGTCGCACAAAAGAAACGAGCTTGTTCGAATTCGGCACGATTCAGATAGTGGGCCCAAACCCTTAAAGAATTTGAATGGCCAAATTTGTCAAATATGTGGTGATACTGTTGGATTAACAGCAACTGGTGATGTCTTTGTTGCTTGCAATGAGTGTGCATTCCCAGTTTGTCGTCCTTGTTATGAATATGAGCGAAAAGATGGGAACAAGTCTTGCCCCCAGTGCAAGACTAGGTACAAAAGGCACAAGGGGAGTCCACGAGTGGATGGAGATGATGATGAGGATGACGTGGATGATATAGAGAATGAGTTCAACTATGGCCAGGGAAATACCAAGGCTCGGCGGCAATGGGAAGGAGAAGATGCAGACCTCTCTTCATCTTCTAGACATGATCCTCAGCAACCAATTCCTCTTCTCACCAATGGACAGCAGATGTCTGGTGAGATCCCTTATGCGACACCTGATACACAATCTGTGCGAACTACATCAGGTCCTTTGGGTCCATCTGAAAAGGTTCATTCACTTCCATATGTTGATCCAAGGCAACCAGTTCCTGTGAGAATTGTAGACCCTTCAAAGGACTTGAATTCTTATGGTTTGCCAAATGTTGACTGGAAAGAAAGGGTTGAAGGTTGGAAGCTTAAGCAGGAGAAAAATATGGTGCAAATGACTGGTAGATACACTGAAGGGAAGGGTGACATGGAAGGGACAGGTTCCAATGGAGAAGAACTGCAAATGGTTGATGATGCACGACAGCCTTTGAGTCGCGTGGTGCCTATTTCTTCTTCTCACTTGACCCCTTATCGTGTCGTAATCATACTCCGGCTTATCATTCTGGGCTTCTTCTTACAATACCGTACAACTCACCCTGTCAAAGATGCATACCCCTTGTGGTTGACATCAGTTATCTGTGAGATTTGGTTTGCCTTATCCTGGCTCTTGGATCAGTTTCCAAAGTGGTCTCCTATTAATCGTGAGACCTATCTTGACAGGCTTTCTTTAAGATATGACCGTGATGGAGAACCATCTCAGTTGGCTCCTGTAGATGTTTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCTCCTCTTGTAACTGCAAACACTGTTTTGTCAATACTTGCTGTTGATTACCCTGTGGACAAGGTTTCCTGCTATGTATCAGATGATGGTTCAGCCATGTTGACTTTTGAAGCCCTTTCAGAAACAGCTGAGTTTGCAAAGAAGTGGGTACCCTTCTGCAAAAAGCACAATATTGAGCCGAGAGCCCCTGAGTTTTACTTTGCCCAGAAGATAGATTACTTGAAGGACAAGATTCAACCTTCGTTTGTGAAGGAGCGCCGAGCAATGAAGAGAGAATATGAAGAATTCAAAGTACGGATAAATGCCCTGGTTGCCAAAGCTCAAAAGATGCCAGAAGAAGGTTGGACCATGCAGGATGGAACTCCCTGGCCTGGAAATAATCCTAGGGATCATCCTGGAATGATTCAGGTGTTCTTGGGTCACAGTGGAGGGCTTGATACAGATGGAAATGAGCTACCTAGACTTGTCTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAGCATCACAAGAAGGCTGGAGCTATGAATGCTTTGATTCGAGTTTCAGCTGTCTTGACCAATGGTGCATATCTGTTGAACGTGGATTGTGATCACTATTTCAACAATAGCAAAGCTCTCAAAGAAGCCATGTGTTTCATGATGGATCCTGTTCTTGGAAAGAAGACTTGCTATGTACAATTCCCGCAGCGGTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAATATTGTGTTCTTTGACATCAACATGAAAGGGCTGGATGGTATCCAGGGCCCAGTCTATGTCGGAACTGGTTGTTGTTTTAACAGACAGGCTCTATATGGTTATGATCCTGTTTTGACGGAGGAAGATTTGGAGCCCAATATTATTGTGAAGAGTTGTTGGGGTTCTAGAAAGAAGGGAAGGGGTGGCAATAAGAAGTACATCGACAAGAAGAGGGCAGCAAAAAGAACTGAATCCACCATTCCCATTTTCAATATGGAAGACATAGAGGAGGGTGTTGAAGGATATGATGAAGAGAGGTCACTTCTTATGTCTCAGAAGAGCCTAGAGAAGCGATTTGGTCAGTCCCCCGTTTTTATTGCCGCCACCTTCATGGAGCAGGGTGGCATTCCTCCTTCAACTAACCCTGCAACTCTTCTAAAGGAAGCAATCCATGTCATCAGCTGTGGTTATGAAGACAAGACAGAATGGGGCAAGGAGATCGGATGGATTTATGGCTCTGTGACTGAAGATATCTTGACCGGGTTCAAGATGCATGCACGTGGCTGGATCTCCGTCTATTGCATGCCACTTCGCCCTGCATTTAAGGGTTCTGCTCCCATCAATCTTTCTGACCGTCTTAATCAGGTGCTTAGGTGGGCCTTGGGGTCAATTGAGATTTTCCTTAGTAGGCATTGTCCCCTATGGTATGGCTACAATGGGAGATTAAAGCCCCTGCAGAGGCTGGCTTATATTAACACAATTGTCTACCCGCTTACCTCAATACCGCTGATTGCGTACTGTGCGCTTCCTGCGTTTTGTCTTCTAACAAATAAATTTATTATTCCAGAGATAAGCAACTTCGCTAGCATGTGGTTTATTCTCCTCTTCGTATCCATTTTTGCGACTTCAATTCTTGAGCTTAGGTGGAGTGGGGTTGGAATAGAAGACTGGTGGAGGAATGAACAGTTCTGGGTTATTGGTGGTACATCTGCACATCTGTTTGCCGTATTCCAAGGGCTTCTCAAAGTGCTTGCTGGTATCGATACAAATTTCACTGTCACGTCAAAGGCATCAGATGAAGACGGAGACTTTGCTGAGCTTTATGTGTTCAAATGGACGTCACTTCTGATTCCTCCTACAACTGTCCTTATAGTGAATTTGGTAGGGATCGTGGCTGGTGTGTCCTATGCCATAAACAGTGGTTACCAATCTTGGGGTCCTCTATTTGGAAAGCTGTTTTTTGCTATATGGGTCATTGCCCATCTGTACCCATTCTTGAAGGGTCTGTTGGGAAGGCAAAATCGCACCCCGACCATTGTTATTGTTTGGTCTATCCTCCTTGCTTCCATATTCTCACTGCTGTGGGTGAGGATCGATCCCTTCACCACTGACGCCACCAAAGCTTCTGCTAATGGTCAATGTGGCGTCAACTGCTAG 3255 0.4516 MQATGGMVAGSHKRNELVRIRHDSDSGPKPLKNLNGQICQICGDTVGLTATGDVFVACNECAFPVCRPCYEYERKDGNKSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYGQGNTKARRQWEGEDADLSSSSRHDPQQPIPLLTNGQQMSGEIPYATPDTQSVRTTSGPLGPSEKVHSLPYVDPRQPVPVRIVDPSKDLNSYGLPNVDWKERVEGWKLKQEKNMVQMTGRYTEGKGDMEGTGSNGEELQMVDDARQPLSRVVPISSSHLTPYRVVIILRLIILGFFLQYRTTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRETYLDRLSLRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAKKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPVLGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCWGSRKKGRGGNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDEERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISVYCMPLRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYNGRLKPLQRLAYINTIVYPLTSIPLIAYCALPAFCLLTNKFIIPEISNFASMWFILLFVSIFATSILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTTDATKASANGQCGVNC 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0573 1084 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 657 IPR029044 -
Dere04g0573 1084 Coils Coil 455 475 - -
Dere04g0573 1084 Pfam Cellulose synthase 357 1076 IPR005150 GO:0016020|GO:0016760|GO:0030244
Dere04g0573 1084 MobiDBLite consensus disorder prediction 74 187 - -
Dere04g0573 1084 FunFam Cellulose synthase 21 112 - -
Dere04g0573 1084 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 261 1050 - -
Dere04g0573 1084 MobiDBLite consensus disorder prediction 137 177 - -
Dere04g0573 1084 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Dere04g0573 1084 FunFam Cellulose synthase 474 648 - -
Dere04g0573 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Dere04g0573 1084 CDD mRING-HC-C4C4_CesA 37 87 - -
Dere04g0573 1084 SUPERFAMILY RING/U-box 22 111 - -
Dere04g0573 1084 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 657 IPR029044 -
Dere04g0573 1084 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0573 Dere-ChrDere04 5687487 5694072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0573 1 1082 Glycosyltransferase AT4G32410 86.544 0.0 1910