LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g0566	ATGGGAGAAACAAAGGACGAAGGATACGAGGAAGAGCTTCTTGACTACGAAGAGGAAGAAGACAAGGCTCCTGATTCCATTGGGACCAAAGTCAATGGCGAGGCTGCTAAGAAAGGCTACGTTGGGATTCATAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGTGCCATTGTGGACTCAGGATTTGAGCATCCTTCTGAAGTACAACATGAGTGCATTCCGCAAGCAATCCTTGGTATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGGAAAACTGCTGTCTTTGTTCTCTCAACCTTGCAGCAGATTGATCCTGTTGCAGGCCAAGTTGCTGCACTTGTTCTGTGTCATACAAGGGAATTAGCATATCAGATTTGCCATGAGTTTGAGAGGTTCAGTACCTACTTGCCTGATCTCAAGGTTGCAGTCTTTTATGGTGGCGTCAACATCAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTAGCACTGGCTAGGGATAAAGACCTTTCATTAAAGAATGTCAGACATTTTATTTTGGACGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTACAAGAGATTTTCAAGATGACGCCTCACGATAAGCAAGTTATGATGTTCTCTGCAACACTCAGCAAGGAAATTCGCCCTGTCTGCAAGAAATTTATGCAAGATCCGATGGAAATTTATGTCGATGACGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCCCTGGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTTGACAAATTACTTGTGGAGTGCAACTTCCCATCTATATGCATCCACTCTGGCATGTCGCAGGAGGAAAGGTTAAAGCGCTATAAAGGTTTTAAGGAGGGGCATACAAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATCGACATTGAACGTGTTAACATTGTTATAAACTATGACATGCCTGATTCTGCTGACACGTATTTGCACCGGGTTGGCAGAGCTGGAAGGTTTGGCACCAAGGGGCTTGCAATTACGTTTGTTTCATGTGCTTCTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAAGTTGATATAAAGCAGCTTCCTGAGCAGATTGATACGTCTACCTACATGCCATCATAG	1284	0.4338	MGETKDEGYEEELLDYEEEEDKAPDSIGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCASDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g0566	427	CDD	DEADc_DDX39	45	252	-	-
	Dere04g0566	427	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	45	402	-	-
	Dere04g0566	427	FunFam	DEAD-box ATP-dependent RNA helicase	259	427	-	-
	Dere04g0566	427	FunFam	DEAD-box ATP-dependent RNA helicase 56-like	34	252	-	-
	Dere04g0566	427	Pfam	DEAD/DEAH box helicase	71	236	IPR011545	GO:0003676\|GO:0005524
	Dere04g0566	427	Gene3D	-	42	258	IPR027417	-
	Dere04g0566	427	MobiDBLite	consensus disorder prediction	1	22	-	-
	Dere04g0566	427	Gene3D	-	259	426	IPR027417	-
	Dere04g0566	427	SMART	helicmild6	302	383	IPR001650	-
	Dere04g0566	427	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	46	74	IPR014014	GO:0003724
	Dere04g0566	427	MobiDBLite	consensus disorder prediction	1	29	-	-
	Dere04g0566	427	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	262	423	IPR001650	-
	Dere04g0566	427	SMART	ultradead3	65	266	IPR014001	-
	Dere04g0566	427	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	115	395	IPR027417	-
	Dere04g0566	427	CDD	SF2_C_DEAD	263	392	-	-
	Dere04g0566	427	Pfam	Helicase conserved C-terminal domain	276	383	IPR001650	-
	Dere04g0566	427	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	77	250	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g0566	Dere-ChrDere04	5642307	5647226	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g0566	1	427	Eukaryotic Initiation Factors Gene Family	AT5G11200	83.795	0.0	761

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere05g2161	05	31767751	31788503	Dere04g0566	04	5642307	5647226	CCT
	Dere04g0566	04	5642307	5647226	Dere04g0566	04	5642307	5647226	ECH
	Dere04g0566	04	5642307	5647226	Dere05g2161	05	31767751	31788503	ECH