Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0562 ATGGTACAATCAAAGAAGTTCAGAGGAGTGAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTTTGCTAAAGAGAAGGGTATGGCTTGGGACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATACGACCAGGCAGCCATTTTGATGAATGGAAGAAATGCAAAGACCAATTTCCCAGCACCCGAGAATGAAGCTGAAGATGGTGGCACTTTCTTGTCTCCCAAGGCTCTTTCAGAGCTATTGACCACAAAGCTTAAGAAATGCTGCAAGGACCCATCCCCATCCCTCACTTGTCTCAGGCTTGATTCTGATAATTCTCACATCGGAGTGTGGCAAAAGAAACCTGGACCTCGCTCTGATTCCAATTGGGTCATAAGAGTAGAGCTTGGCAAGAAACAAGTAGAGGATCATAACACCACGTTAGCTAATGCAGCAGCAGACATTATTAGTGGTGAAGCTGCAAGTGGGGTGGAAGAAGAAGAGGACAAAGTGGCAATGCAGATGATTGATGAGCTTCTTAATTGGAACTATCCATGTGGTTCCTCCAGTAGCCCTCAGGAAGATAAAAAATCACCTTCAATCTCAGAGTTCTTGAATTAG 612 0.4624 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPAPENEAEDGGTFLSPKALSELLTTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKKPGPRSDSNWVIRVELGKKQVEDHNTTLANAAADIISGEAASGVEEEEDKVAMQMIDELLNWNYPCGSSSSPQEDKKSPSISEFLN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0562 203 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Dere04g0562 203 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Dere04g0562 203 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Dere04g0562 203 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Dere04g0562 203 MobiDBLite consensus disorder prediction 183 203 - -
Dere04g0562 203 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Dere04g0562 203 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Dere04g0562 203 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Dere04g0562 203 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Dere04g0562 203 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 153 - -
Dere04g0562 203 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0562 Dere-ChrDere04 5619894 5620609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0562 1 190 AP2-EREBP Transcription Factor Family AT5G25390 61.224 1.30e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g0562 AP2 2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0562 04 5619894 5620609 Dere04g0562 04 5619894 5620609 ECH
Dere14g0242 14 2528939 2530437 Dere04g0562 04 5619894 5620609 ECH