Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0561 ATGGAGCATTTGCTACACGGGACGCTTATTGTAACCATATATGAAGTTGATAGGCTGCACACTAGATGCAACTTTGATTTCTGCAACAAGGATATACCTCACAGGGGGAAGAGATTTCTAGCCCAAGTCAAGGGATGTTTGCTGTGTCGGCCTGAGATTGTTGGGACCAGACTGTATGCAACAGTTGATTTAGATAAAGCCAGAGTTGGGAGAACCAGAGTGATAAAAAATCAACCCTCCCACCCCAAGTGGAATGAGACCTTTCACATATATTGTGCCCATAAGGTATCAAACATTATATTCACAGTCAAAGATGGAAATCCTATTGGAGCCACCCTAATTGGAAGAGCTTATGTCCCTGTGGATCAAGTCTTGAAGAGAGGCCTACTCAACAGACAGGTTGAGATATTTGATGAAGATCATCGTCCTATACCAGGTGGCTCTAAAATACATGTCAAGATAGAATTCTCTGATGCTACCACTCACCCTAACTGGTCTAGAGGAATACAGAGTCCATGGTTTCCAGGAGTACCTCACGTATTCTTCAATCAGAGACAAAATTGCAAAGTCACTTTGTACCAAGATGCCCATGTCCATAATGATTTTAAGGTATCCATCCCACTGTCCGGAGGATTTAGATTATATAATCCAGAAAGATGTTGGGAGGACATTTCCAAAGCCATTGTTAATGCTAAGTACTTGATTTACATAACTGGGTGGGCTATTTACACTGAAATAACCTTAACTAGGAACCCAGATGGGCCATCTGAAATGACTTTGGGGAAGCTGCTCAAGATGAAAGCCGATGAAGGAGTGAACGTGCTTATGCTTGTGTGGGATGACAGAACTTCTGACGAATATAGAGAAGAAGGGTTGATGGGAACCCACGATGAAGAAACTGCAGATTACTTCAGGGATACTAATGTACATTGTGTCTTGTGCCCTAGAAATCCAGATGTTGGAAGAAGCATAATTCAGGAGCTTCAAACTTCAACTATGTTCACTCACCACCAAAAGGCAGTAGTTGTTGACAGTGACTTACCTGACATTAGTGAAGTGCCTGATGGAGAATCACATAAGAGGAGGATTGTGAGTTTTATAGGCGGAATTGATCTGTGTGAGGGTAGATATGATACACAAGAACATCCTTTGTTTTCAACTCTGAACACAATCCATCATGATGATTTCCACCAGCCAAACTTCCCAGATGCTTCAATTGAGAAAGGTGGTCCAAGAGAACCTTGGCATGACATTCATTGCCAACTAGAAGGACCTGTTGCTTGGGATGTCTTGTACAATTTTGAGCAGAGGTGGGAGAAGCAAGTTGGAAAGGACTTTCTAATGCCTCTTACCATGCATGATGAGATTATTGTCCCTCCATCTGAAGTAACGACATCAGAAGACAGAGAGACATGGACTGTTCAGTTGTTCAGATCCATTGATGGTGGTGCAGCTTCTGGCTTCCCTCAAGATCCAAATAAAGCGGCTGAATTAGGCCTTGTTAGTGGGAAAAATAACATCATTGACAGAAGCATTCAGGATGCTTACATAAATGCTATTAGGCGAGCCAAGAATTTCATTTATATTGAAAACCAGTATTTTCTAGGGAGTTCGTATGGTTGGAAAGCATCTGACATAAAAGTTGAAGATATTGGAGCTCTGCATCTTATACCGAAGGAGCTGTCATTAAAGATTGTGAGCAAGATTGAAGCAGGAGAGAGGTTTGTTGCGTACATTGTGATCCCAATGTGGCCAGAAGGTGTACCTGAGAGTGCTTCAGTTCAAGCAATATTGGATTGGCAAAGGAGGACTATGGAGATGATGTATACTGATATTGTTGAAGCCATTCAGAAAAAGGGAATTGAAGCCCAGCCTAGAGATTATCTCACTTTTTTCTGCCTTGGAAATAGAGAGTTTGAGAAGCATGGGGAATATATTCCTCCAGAGAGACCAGTGCCAGATAGTAATTATGAGAGAGCACAGAAAGCCAGGCGCTTCATGATCTATGTTCATTCAAAGATGATGATAGTTGATGATGAGTATATAATAGTTGGTTCAGCCAACATAAATCAGAGATCAATGGATGGAGGAAGGGACACAGAGATTGCAATGGGGGGATTCCAACCTCATCATCTAACAGAGAATGGGAGACCAAAAGGTCAGATATATGGGTTCAGAAGGGCTTTATGGTTTGAGCATCTTGGAGATGTTGATGTGCGAGACTTTGACAGTCCAGAAAGTGAAGAATGTGTGAGGTTTGTGAATTTTGTTGCTGACAAGAACTGGAAATTATACTCAGACGATGCAATTGATAGAGATACTTTCCTTAGTCTAGATTTTAGCCACCTCTTGAGCTACCCGATTGATATAACTAAAGATGGGAAAGTAACTACACATCCAGGGTTCGAATTCTTTCCTGACACCAAGGCCCCTATTCTGGGGTCCAAATCTGAGTTCCTTCCTCCTATTCTCACCACCTAA 2481 0.4192 MEHLLHGTLIVTIYEVDRLHTRCNFDFCNKDIPHRGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRVIKNQPSHPKWNETFHIYCAHKVSNIIFTVKDGNPIGATLIGRAYVPVDQVLKRGLLNRQVEIFDEDHRPIPGGSKIHVKIEFSDATTHPNWSRGIQSPWFPGVPHVFFNQRQNCKVTLYQDAHVHNDFKVSIPLSGGFRLYNPERCWEDISKAIVNAKYLIYITGWAIYTEITLTRNPDGPSEMTLGKLLKMKADEGVNVLMLVWDDRTSDEYREEGLMGTHDEETADYFRDTNVHCVLCPRNPDVGRSIIQELQTSTMFTHHQKAVVVDSDLPDISEVPDGESHKRRIVSFIGGIDLCEGRYDTQEHPLFSTLNTIHHDDFHQPNFPDASIEKGGPREPWHDIHCQLEGPVAWDVLYNFEQRWEKQVGKDFLMPLTMHDEIIVPPSEVTTSEDRETWTVQLFRSIDGGAASGFPQDPNKAAELGLVSGKNNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKASDIKVEDIGALHLIPKELSLKIVSKIEAGERFVAYIVIPMWPEGVPESASVQAILDWQRRTMEMMYTDIVEAIQKKGIEAQPRDYLTFFCLGNREFEKHGEYIPPERPVPDSNYERAQKARRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGGRDTEIAMGGFQPHHLTENGRPKGQIYGFRRALWFEHLGDVDVRDFDSPESEECVRFVNFVADKNWKLYSDDAIDRDTFLSLDFSHLLSYPIDITKDGKVTTHPGFEFFPDTKAPILGSKSEFLPPILTT 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0561 826 Gene3D Endonuclease Chain A 479 706 - -
Dere04g0561 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 666 693 IPR001736 GO:0003824
Dere04g0561 826 SMART pld_4 666 693 IPR001736 GO:0003824
Dere04g0561 826 SMART pld_4 332 376 IPR001736 GO:0003824
Dere04g0561 826 Pfam C2 domain 9 132 IPR000008 -
Dere04g0561 826 FunFam Phospholipase D 479 712 - -
Dere04g0561 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 332 376 IPR001736 GO:0003824
Dere04g0561 826 FunFam Phospholipase D delta 211 456 - -
Dere04g0561 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 157 IPR035892 -
Dere04g0561 826 SMART C2_3c 8 133 IPR000008 -
Dere04g0561 826 Pfam Phospholipase D C terminal 741 816 IPR024632 -
Dere04g0561 826 SUPERFAMILY Phospholipase D/nuclease 509 734 - -
Dere04g0561 826 Pfam Phospholipase D Active site motif 667 693 IPR001736 GO:0003824
Dere04g0561 826 Pfam Phospholipase D Active site motif 332 376 IPR001736 GO:0003824
Dere04g0561 826 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Dere04g0561 826 SUPERFAMILY Phospholipase D/nuclease 162 450 - -
Dere04g0561 826 CDD C2_plant_PLD 4 156 - -
Dere04g0561 826 Gene3D C2 domain 6 170 IPR035892 -
Dere04g0561 826 PIRSF PLD_plant 1 826 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dere04g0561 826 Gene3D Endonuclease Chain A 211 454 - -
Dere04g0561 826 PANTHER PHOSPHOLIPASE D 4 815 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0561 Dere-ChrDere04 5614550 5617483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0561 2 826 Phospholipase D Gene Family (Wang group) AT3G15730 63.636 0.0 1079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0561 04 5614550 5617483 Dere11g1765 11 31512713 31518203 ECH
Dere04g0561 04 5614550 5617483 Dere12g1667 12 29162237 29165645 ECH
Dere04g0561 04 5614550 5617483 Dere04g0561 04 5614550 5617483 ECH