Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0560 ATGCAACATTTGCTGCACGGGACGCTTGATGTTACCATATATGAGATCGACAGGCTGCATACCGGACTCAACTTCAATCTCCGCAACAAGGGTACTAGAAACTTCGGGAAAAAAGTTCTTGTCCAACTCAAGAGTTTTATGCGGCGCAAACCTGAGATTGCTGGGACAAAACTGTATGCAACCGTTGATTTAGACAAGGCCAGAGTTGGACGGACTAGAATGGTAGGTCATGCCTCCAAACCCAAATGGAACGAGACCTTTCACATATACTGTGCCCACTCGATCACCCACATTATATTCACAATAAAAAATGACAATCCTATTGGGGCAACTCTAATTGGAAGAGCCCATGTGCCTGTTGTGCAAGTCCTGAAGGGTAACATAGTGGATACATGGGTTGCCATATGGGATGAGGATTCTCGTCCCATACAAGGTGGCTCTAAAATACATGTTAGGATGCAGTTTTTTGATGTTACAAAGCATGCAAATTGGTCTCAAGGAATAAGGAGTCCAAGGTATGCCGGAGTTCCTCGCACATTCTTTACTCAAAAAAGTGGTTGCAAAGTTACTTTGTACCAAGATGCTCATGTCCCAGATGCTTATCTCCCAAGAATTCCCCTGTCTCAAGGAAAATATTATGAGCCTAGTAGATGCTGGGAGGACATTTTCAATGCCATCACAAATGCTAGGCACTTGGTTTACATAACTGGTTGGTCAGTGTATACTGAAATAACATTAATAAGGGACCCAAGGAGGTCAATTTATGGGGGACACATGACCCTTGGGGAGCTTCTCAAGAAAAAAGCTGATGAAGGTGTGAATGTTCTTATGCTTGTGTGGGATGACAGAACTTCGGTTGAAGAACTGAGGAAAGATGGGTTGATGGCAACCCATGATCAGGAAACTGCAGAGTATTTTAAGAATACAAAAGTGCATTGTTTGTTGTGCCCACGTAACCCAGATGATGGAAGCAGCATCATTCAGGGTTTTGAGATTTCAACAATGTTTACTCATCACCAGAAGACAGTCATTGTTGATAGTGAAGTACCTGGTGGGGGATCCAGGAAGCGGAGGATAGTAAGTTTTGTTGGTGGTATTGATCTGTGTGATGGGAGATATGATACACAAGAACATCCTTTGTTTTCAACTCTGAACACGACCCATCATGACGATTTCCATCAGCCAAACTTTCCAGGGGCTTCCATCAAGAAAGGAGGCCCAAGAGAACCGTGGCATGATATTCACTGTAGACTAGAAGGGTCAGTGGCTTGGGATGTGTTTTTCAATTTTCAGCAAAGGTGGGAGAAGCAAGATGGGAAGCAATTGTTACTTCCTCCTAGTAGGCTTGATGAGATTCTAGTACCTCAGTCATATATAGCATCAAATGACATGGAGTCATGGACTGTTCAGTTGTTCAGATCCATTGATGGTGGTGCAGCTTCTGGCTTCCCTCAAGATCCAAATAAAGCGGCTGAATTAGGCCTTGTTAGTGGGAAAGATACCATCATTGACAGAAGTGTTCAGGATGCTTACATAAATGCTATTAGGCGAGCCAAGAATTTCATCTACATTGAAAATCAGTATTTCTTAGGGAGTTCGTATGGTTGGAAAGCATCTGACATAAAAGTTGAAGATATTGGGGCTTTGCATCTTATACCAAAGGAGCTGTCACTGAAAATTGTGAGCAAGATTGAAGCAGGCGAAAGGTTTGCTGTGTACATTGTGATCCCAATGTGGCCAGAAGGTATACCCGAGAGCGATTCAGTTCAAGCAATACTGGATTGGCAGAGGAGGACAATGGAGATGATGTATAATGATGTTGCTGCAGCTATTCAGAGAAAGAGAATTAGAGCCCACCCTAGGGATTACTTGACGTTTTTCTGCCTTGGAAATCGGGAGGGTAAGAAAGTTGAAGAGTATGTTCCTCCAGAGAGACCAGATCCTGATACTGATTATAGGAGAGCACAAGAAGCCAGGCGCTTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAGTACATAATCATTGGTTCTGCAAACATAAACCAGAGATCCATGGATGGCGCTAGGGACAGCGAGATTGCAATGGGCGCATTCCAACCATATCATCTAACATCCTATGGGCCACCCAGAGGTCAGATATATGGGTTCAGACGGGCATTATGGTATGAGCACCTTGGAGATCATCCTGATGATGAAGCCTTTGACCATCCAGAAAGTGGTGGTTGTGTCCAGCTCGTTAATTATCTTGCTAACAGGAACTGGGAAATATACTCAAAGCAAACCTTTGATCAACGAAATTCATTTAAGCACCTCCTACGCTACCCCATAGATATAACCAAAGACGGGACTGTGACAGCGCTACCAGAATTCCGATTCTTTCCTGACACCAAAGCTCCTGTTCTGGGCTCCAAATCAAACCTTCCCCCAATTCTCACCACATAA 2454 0.4364 MQHLLHGTLDVTIYEIDRLHTGLNFNLRNKGTRNFGKKVLVQLKSFMRRKPEIAGTKLYATVDLDKARVGRTRMVGHASKPKWNETFHIYCAHSITHIIFTIKNDNPIGATLIGRAHVPVVQVLKGNIVDTWVAIWDEDSRPIQGGSKIHVRMQFFDVTKHANWSQGIRSPRYAGVPRTFFTQKSGCKVTLYQDAHVPDAYLPRIPLSQGKYYEPSRCWEDIFNAITNARHLVYITGWSVYTEITLIRDPRRSIYGGHMTLGELLKKKADEGVNVLMLVWDDRTSVEELRKDGLMATHDQETAEYFKNTKVHCLLCPRNPDDGSSIIQGFEISTMFTHHQKTVIVDSEVPGGGSRKRRIVSFVGGIDLCDGRYDTQEHPLFSTLNTTHHDDFHQPNFPGASIKKGGPREPWHDIHCRLEGSVAWDVFFNFQQRWEKQDGKQLLLPPSRLDEILVPQSYIASNDMESWTVQLFRSIDGGAASGFPQDPNKAAELGLVSGKDTIIDRSVQDAYINAIRRAKNFIYIENQYFLGSSYGWKASDIKVEDIGALHLIPKELSLKIVSKIEAGERFAVYIVIPMWPEGIPESDSVQAILDWQRRTMEMMYNDVAAAIQRKRIRAHPRDYLTFFCLGNREGKKVEEYVPPERPDPDTDYRRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPYHLTSYGPPRGQIYGFRRALWYEHLGDHPDDEAFDHPESGGCVQLVNYLANRNWEIYSKQTFDQRNSFKHLLRYPIDITKDGTVTALPEFRFFPDTKAPVLGSKSNLPPILTT 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0560 817 Pfam C2 domain 7 134 IPR000008 -
Dere04g0560 817 Gene3D Endonuclease Chain A 476 702 - -
Dere04g0560 817 SUPERFAMILY Phospholipase D/nuclease 159 447 - -
Dere04g0560 817 SMART pld_4 661 688 IPR001736 GO:0003824
Dere04g0560 817 SMART pld_4 334 372 IPR001736 GO:0003824
Dere04g0560 817 Pfam Phospholipase D C terminal 735 808 IPR024632 -
Dere04g0560 817 SMART C2_3c 8 132 IPR000008 -
Dere04g0560 817 Gene3D C2 domain 6 167 IPR035892 -
Dere04g0560 817 ProSiteProfiles C2 domain profile. 1 133 IPR000008 -
Dere04g0560 817 SUPERFAMILY Phospholipase D/nuclease 507 735 - -
Dere04g0560 817 FunFam Phospholipase D delta 209 450 - -
Dere04g0560 817 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 158 IPR035892 -
Dere04g0560 817 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 334 372 IPR001736 GO:0003824
Dere04g0560 817 Pfam Phospholipase D Active site motif 662 688 IPR001736 GO:0003824
Dere04g0560 817 Pfam Phospholipase D Active site motif 334 372 IPR001736 GO:0003824
Dere04g0560 817 Gene3D Endonuclease Chain A 207 452 - -
Dere04g0560 817 PANTHER PHOSPHOLIPASE D 4 806 IPR015679 -
Dere04g0560 817 PIRSF PLD_plant 1 817 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dere04g0560 817 CDD C2_plant_PLD 4 156 - -
Dere04g0560 817 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 661 688 IPR001736 GO:0003824
Dere04g0560 817 FunFam Phospholipase D 474 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0560 Dere-ChrDere04 5608900 5612190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0560 2 817 Phospholipase D Gene Family (Wang group) AT3G15730 66.017 0.0 1118