Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0553 ATGGGAGAAAAGCCTTCTTTCTTCCATATAATTACTACCCTAACCCTATGGTTGTCTATACCCCTTTTGTCTGAAATCTGTTTGGTTGAGGTTCTAGGAAGAGTTGGCAACCTGTCTCCTGGTTTTCAAGGATCTCAGGTGAATTGGATAGACGAAGGCGGCAAGTTTCTCCAGTCAAACAATGGAGAATTCAGCTTTGGCTTCATCACTACTCCAAATGACTTCACTTTGTTTCTACTAGGGATCGTCCACACGGCCACTTCCACAGTGGTTTGGACTGCTAATAGAGCAATTCCCGTTTCCAATTCTGATAACTTTGTGTTTGATAAAAACGGTAACGCCTTCTTACAGAAAGGAAGATCCATGGTTTGGTCTACGAATACCAGTGGCAAAGGGGTCTCTTCAATCGAATTGCGGGACGTAGGAAATCTAGTTTTGCTTGGGAGCAAAAGTAACATTATTTGGCAGAGTTTCAGCTACCCAACAGATACCTTGTTGCCAAATCAGGACTTCACTGAAGGAATGAAACTTATCAGCGAACCAACCTCTAATAACTATTCTTACGTTCTTGAGATCAAATCTGGTAACGTCATTCTTTCTGCTGATTTCCAAACTCCTCAGCCTTACTGGTCTATGCAGAAAGATAGCCGCAAAACCATTGATAAAGCTGGTGGTGTGGTGGCTTCAGCATCACTGAGTGAAAATTCCTGGAGGTTCTATGATAAAAACAAGTCCTTGTTATGGCAATTCATTTTTGCTCAACATTCAGGGACGAATGCCACTTGGATTGCTGTGTTGGGAAGTAATGGCTTTATCACTTTCTCTGATCTCCAAAGTGAAAGGCCAACTACTGTTTCTCCAATTAGAATACCACAAAACTATTGTAGTACACCAGAACCTTGTGACCCTTATTACTTATGCACTGATAATAACTATTGTCGTTGTCCTTCTGTTCTTAGCTCTCGTTCTAATTGCAAACCAGGGAATATTGTCTCTTCTTGTAGTAAGTCTAAAACTTCTATAGAGCTCGTGAAATCTGACAATGGAATCCATTACTTTGCCCTTGATTTTCTTCCACCCTCTTCAAAAACTGATTTGAATGGTTGTAAAGCTTCTTGCCTTGGAAATTGCTCATGCCTTGCTATGTTCTTCCATAACAATTCAGGGAACTGTTTTTTGTTGGACAGCATAGGAAGCTTCAAGACTTCTGATGCAAATTCTGGCTTTGTTTCTTTCATTAAAGTCTCGAGTGATGGAGGCGGAGGGGATGGTGGAAGGAGCAATAAGCACACCATAGTTGTCGTGGTCATTGTCTCATCAATATTGCTCGTCTTGTTGGTTCTCGTCTGTGTGGGATTTCGATACTACAGGAGGAAGCAAACGTTGCATGAGTCTCCTGGGGAGAATTCAGAAGAGGACATTTTCTTGGGGAATTTAACTGGCAAGCCAAATCGTTTTAACTATAAAGATCTTGAAATAGCAACTAATAATTTCTCAGTGAAGCTCGGGCAAGGGGGCTTTGGTTCAGTTTATAAAGGGGTTCTACCAGATGGGACTCAGGTAGCTGTGAAGAAATTGGAAGGCATCGGGCAAGGGAAGAAAGAGTTCAGAGCAGAAGTCAGCATCATTGGCAGCATCCATCATCACCATTTGGTCAGGCTCAAAGGGTTCTGTGCGGAAGGATCTCATAGGCTTCTTGCTTACGAGTATATGGCTAACGGGTCATTGGACACATGGATATCCAAGAAAAGCGAGGGAGAGTTTATGTTGGATTGGAATACCAGGTTTAATATAGCACTAGGAACAGCAAAAGGACTAGCTTACCTACATGAAGATTGCGACTCTAAGATTGTACACTGTGACATCAAACCAGAGAACGTGCTTCTTGATGACAATTTCCTAGCTAAAGTTTCAGACTTTGGTTTGGCTAAGCTAATGACTCGTGAGCAAAGCCATGTTTTCACGACACTAAGGGGCACCAGAGGATATCTAGCGCCAGAGTGGATCACAAACCATGCTATATCAGAGAAAAGTGATGTTTATAGCTACGGGATGGTGTTACTGGAGATCATTGGAGGAAGGAAGAATTATGATCCTAATGAAACTTCAGAGAAATCCTATTTCCCATCTTTTGCTTTTAAGATGATGGAAGAAGGAAAGCTGAGAGATATTATCGATTCAAGGTTGAATATAGATGAAAATGATGAAAGGTTTCATAATGCCATTAAGATTTCATTGTGGTGCATACAGGAAGACATGTCTCTGAGACCTTCCATGGTCAAAGTTGTCCAAATGCTTGAGGGTCTCTGTTTTGTTCCTAAGCCTCCAACTTGTCCCCAATTGGGTTTTCGCCTTCACTCAAGACCCACTTTAGAACAGTCAGACTCTAATAGTGACACTCATCTCTTTGCAGTTGGGCTTTCAGGACCAAGATAG 2436 0.4183 MGEKPSFFHIITTLTLWLSIPLLSEICLVEVLGRVGNLSPGFQGSQVNWIDEGGKFLQSNNGEFSFGFITTPNDFTLFLLGIVHTATSTVVWTANRAIPVSNSDNFVFDKNGNAFLQKGRSMVWSTNTSGKGVSSIELRDVGNLVLLGSKSNIIWQSFSYPTDTLLPNQDFTEGMKLISEPTSNNYSYVLEIKSGNVILSADFQTPQPYWSMQKDSRKTIDKAGGVVASASLSENSWRFYDKNKSLLWQFIFAQHSGTNATWIAVLGSNGFITFSDLQSERPTTVSPIRIPQNYCSTPEPCDPYYLCTDNNYCRCPSVLSSRSNCKPGNIVSSCSKSKTSIELVKSDNGIHYFALDFLPPSSKTDLNGCKASCLGNCSCLAMFFHNNSGNCFLLDSIGSFKTSDANSGFVSFIKVSSDGGGGDGGRSNKHTIVVVVIVSSILLVLLVLVCVGFRYYRRKQTLHESPGENSEEDIFLGNLTGKPNRFNYKDLEIATNNFSVKLGQGGFGSVYKGVLPDGTQVAVKKLEGIGQGKKEFRAEVSIIGSIHHHHLVRLKGFCAEGSHRLLAYEYMANGSLDTWISKKSEGEFMLDWNTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDNFLAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNHAISEKSDVYSYGMVLLEIIGGRKNYDPNETSEKSYFPSFAFKMMEEGKLRDIIDSRLNIDENDERFHNAIKISLWCIQEDMSLRPSMVKVVQMLEGLCFVPKPPTCPQLGFRLHSRPTLEQSDSNSDTHLFAVGLSGPR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0553 811 FunFam serine/threonine-protein kinase PBS1-like 465 570 - -
Dere04g0553 811 MobiDBLite consensus disorder prediction 790 811 - -
Dere04g0553 811 FunFam Serine/threonine-protein kinase 44 159 - -
Dere04g0553 811 Gene3D - 49 160 IPR036426 -
Dere04g0553 811 ProSiteProfiles PAN/Apple domain profile. 334 417 IPR003609 -
Dere04g0553 811 Pfam D-mannose binding lectin 89 171 IPR001480 -
Dere04g0553 811 SMART serkin_6 496 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0553 811 PIRSF SRK 11 805 IPR024171 GO:0004674
Dere04g0553 811 Gene3D Phosphorylase Kinase; domain 1 463 570 - -
Dere04g0553 811 CDD B_lectin 53 161 IPR001480 -
Dere04g0553 811 CDD STKc_IRAK 502 769 - -
Dere04g0553 811 FunFam S-receptor-like kinase 5 571 775 - -
Dere04g0553 811 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Dere04g0553 811 SMART blect_4 48 161 IPR001480 -
Dere04g0553 811 CDD PAN_AP_plant 361 416 - -
Dere04g0553 811 SUPERFAMILY Protein kinase-like (PK-like) 478 767 IPR011009 -
Dere04g0553 811 Pfam Protein kinase domain 500 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0553 811 Gene3D Transferase(Phosphotransferase) domain 1 571 771 - -
Dere04g0553 811 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 48 779 - -
Dere04g0553 811 ProSiteProfiles Protein kinase domain profile. 496 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0553 811 ProSiteProfiles Bulb-type lectin domain profile. 42 159 IPR001480 -
Dere04g0553 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 212 IPR036426 -
Dere04g0553 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0553 Dere-ChrDere04 5538595 5541030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0553 440 776 Receptor kinase-like Gene Family AT5G20050 46.779 3.90e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Dere04g0553 Pkinase 9.5e-53 CL0016