Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0533 ATGAGTACTCTTCTGAAGTGCTACAGACCTTTCTTCTCGATGCTTCCCTACCCGGCTCGAACATTTCAAATCAGAACCAACTGGGGTGCCCACGCCACCATTTTCAGGAGGAAGAAGCTGGGTTCGGTTACTCGTTGTATTAGTGTCAGTTCTTTGCGGTCATCCCAGCCGTCGATTGCTAAACAGAGCTTCGGGAAATCCGACGGTGAGAGGGTCAAGAGTCCATCGCCAGAGCTGTGGCTTCATAACACGATGAGTAAAAAGAAGGAGCTGTTCAAACCCAAAGTGGAAGGGAAAGTTGGAATGTATGTCTGTGGAGTTACTGCATATGATCTTAGCCATATTGGACATGCTCGCGTCTACATCAATTTTGATGTTCTTTACAGATATCTCAAGCATTTGGAATTTGAAGTCTGTTATGTTCGCAATTTTACTGACGTAGATGACAAGATAATTGCTAGAGCAAAGGAGTTAGGAGAGGATCCAATCAGTTTGAGCCGGCGATATTGTGAAGAGTTCAGTCGAGACATGGAAACTCTTCATTGTATACCTCCTTCTGTGGAACCAAGAGTCTCGGAGCACATGACCCAAATCATTGATATGATTGAGCAGATTATTAATAATGGGTATGCCTATGTTGTTGATGGGGATGTCTACTTTGACGTAGAAAAATTTCCTGAATATGGGCAGTTATCTGGACGAGACCTAGAAGATAATCGAGCAGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCACGGTGAACCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCAGCTTATCTCGGTTACTCTTTTGACATCCATGGTGGAGGGATCGATCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTAATATTAGTCTCTGGATACACAATGGCTTTGTCACTGTTGACTCAGAGAAGATGTCAAAGTCTCTGGGAAACTTTTTCACCATACGACAGGTTGTAGACCTTTACCATCCACTGGCTTTGAGATATTTTTTGATGGGAGCTCACTATCGATCTCCTATTAACTACTCTCATGTTCAGCTTGAAAGTGCTTCAGACCGTGTTTTCTATATATATGAGACTTTACATGAATGTCAAAGCTTTCTGTACCAGCAAGATCTAACAAATAGGAAGGATTCCATCCCACCTCATACTTTGGATATGATTAGTAAGTTTCATGATGGTTTCTTGGCCTCAATGTCTGATGACCTTCACACCCCAGTTGTATTGGCTGCATTGTCTGACCCTTTAAAAGCAATCAATGATCTGCTACATACTCGTAAGGGGAGGAAACAAGAATTGCGAATTGAATCACTTTCTGCTCTGGAGAAGACTACAAGGAAAGTTCTGACTGTTTTAGGACTTATGCCTGCAAGTTATTCTGAGGTTTTGCAGCAGCTTAGGGAAAAAGCTTTAAAGCGTGCAAACTTGACAGAAGTTGAAGTCTTGCAGAAAATTGAAGAACGGGCTGCTGCCAGAATAAATAAGGAGTATGAAAAATCAGACGCAATCAGGAATGATCTGGCTGTTTTGGGTATCGCTCTTAAGGACAGTCCGAATGGTACAACGTGGAGGCCCACCATTCCTCTTTCACTTCAAGAACAGCAGACTGCTGCACCTTAA 1734 0.4308 MSTLLKCYRPFFSMLPYPARTFQIRTNWGAHATIFRRKKLGSVTRCISVSSLRSSQPSIAKQSFGKSDGERVKSPSPELWLHNTMSKKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYINFDVLYRYLKHLEFEVCYVRNFTDVDDKIIARAKELGEDPISLSRRYCEEFSRDMETLHCIPPSVEPRVSEHMTQIIDMIEQIINNGYAYVVDGDVYFDVEKFPEYGQLSGRDLEDNRAGERVAVDSRKKNPADFALWKSAKHGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSNISLWIHNGFVTVDSEKMSKSLGNFFTIRQVVDLYHPLALRYFLMGAHYRSPINYSHVQLESASDRVFYIYETLHECQSFLYQQDLTNRKDSIPPHTLDMISKFHDGFLASMSDDLHTPVVLAALSDPLKAINDLLHTRKGRKQELRIESLSALEKTTRKVLTVLGLMPASYSEVLQQLREKALKRANLTEVEVLQKIEERAAARINKEYEKSDAIRNDLAVLGIALKDSPNGTTWRPTIPLSLQEQQTAAP 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0533 577 CDD CysRS_core 80 381 IPR032678 -
Dere04g0533 577 SUPERFAMILY Nucleotidylyl transferase 78 388 - -
Dere04g0533 577 Hamap Cysteine--tRNA ligase [cysS]. 79 564 IPR015803 GO:0004817|GO:0005524|GO:0006423
Dere04g0533 577 SMART dalr_2_4 432 501 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Dere04g0533 577 PANTHER CYSTEINYL-TRNA SYNTHETASE 73 573 IPR024909 -
Dere04g0533 577 Gene3D HUPs 60 381 IPR014729 -
Dere04g0533 577 PRINTS Cysteinyl-tRNA synthetase signature 102 113 IPR024909 -
Dere04g0533 577 PRINTS Cysteinyl-tRNA synthetase signature 267 285 IPR024909 -
Dere04g0533 577 PRINTS Cysteinyl-tRNA synthetase signature 298 319 IPR024909 -
Dere04g0533 577 PRINTS Cysteinyl-tRNA synthetase signature 138 147 IPR024909 -
Dere04g0533 577 FunFam Cysteine--tRNA ligase 78 379 - -
Dere04g0533 577 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 381 563 - -
Dere04g0533 577 Pfam tRNA synthetases class I (C) catalytic domain 92 388 IPR032678 -
Dere04g0533 577 NCBIfam cysteine--tRNA ligase 80 562 IPR015803 GO:0004817|GO:0005524|GO:0006423
Dere04g0533 577 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 419 563 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Dere04g0533 577 Pfam DALR domain 433 493 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Dere04g0533 577 Gene3D - 382 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0533 Dere-ChrDere04 5375644 5380180 Dispersed