Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0523 ATGGCGTTCCATAATCACGAGCTCTCCCAAGACCTTCCACCCCACCAATTCTCTGACTCCGATCAACACAATTGCCTCACCCACGCCCTTCTCCATACCCACTACACTCACCACAGCAACAATAACAGTGCCAACAGTTTCCTCAACCCCCACACTTCCGCCTCTGACTCAACCGGAGCTGCTCCCCACCGCCCGATTCTCCACCGTGACCAGAGTGACGTCATCGACGACGTCGCTGCCGGGAACTCCATCATCGATGGCGCTACCTTGTCCCACGAGTCCGCCGATTTGAAGACAGCCGCCGGCGACAACCTCAATGCTAAGAGCGAGGTGGTTGTGGAGGACAGCGAGGAGGGGTTGGTGAAGTGGGAGAATGCGAGGTCCAAGGCGAAGATTCTAGCGCACCCGCTGTACGAACAACTGCTGTCCGCCCACGTGGCGTGCTTGCGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATCGACGCTCAACTAGCGCAGTCCCAGAATTTGATGGCCAAGTATTCGGCGCTAGGACAGGGAGCACAGAGCGTGGATGGGGATGACAAGGGACTCGATCAATTCATGTCGCACTATGTTCTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCAGGGTTCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATAGAACAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGAGCTACCATGTCTGATGATGAAGATGACCAAGTAAATAGTGATGACAATCTATTTGATGGTACTTTGGACGGTTCAGACAGCATTGGGTTTGGCCCTCTTATTCCAACTGAGAATGAGAGGTCCCTCATAGAGCGAGTCAGGCAAGAGCTGAGGCATGAACTGAAACAGGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTGCGTAAGAGACGAGCAGGGAAACTTCCCGGTGATTCCACTTCTGTCCTTAAAGCTTGGTGGCAAGCACATTCCAAGTGGCCTTACCCTACTGAGGAAGACAAAGCAAAGTTGTTACAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTCATCAATCAAAGGAAGAGGAACTGGCACAGCAATGCTTCAACTTCAACTTCAACTTCAACGGTCCTGAAGAGCAAGCGGAAGAGAAGCAATGAGAAAGAAGCACATTTTGATTGTTGTGAAGGAAGAGGGTTAGTGATAGTACTTGATACAGATGAGGAGGAATTCCTTTACTTGATTAATGGAATCATCTGGCTTCTTCCATCATTGTTGGAATCTCCCTTCATCGCCAGCATCACAGATGAAGGGGACGACTCTGGCGTCTTCATCGTCATTGGTTGCTTTTTCTTCACTATCATTCTTCGTCCTTTATCTTTTTTGGCATTTTAA 1428 0.4909 MAFHNHELSQDLPPHQFSDSDQHNCLTHALLHTHYTHHSNNNSANSFLNPHTSASDSTGAAPHRPILHRDQSDVIDDVAAGNSIIDGATLSHESADLKTAAGDNLNAKSEVVVEDSEEGLVKWENARSKAKILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNLMAKYSALGQGAQSVDGDDKGLDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVNSDDNLFDGTLDGSDSIGFGPLIPTENERSLIERVRQELRHELKQGYKEKIVDIREEILRKRRAGKLPGDSTSVLKAWWQAHSKWPYPTEEDKAKLLQETGLQLKQINNWFINQRKRNWHSNASTSTSTSTVLKSKRKRSNEKEAHFDCCEGRGLVIVLDTDEEEFLYLINGIIWLLPSLLESPFIASITDEGDDSGVFIVIGCFFFTIILRPLSFLAF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0523 475 FunFam homeobox protein knotted-1-like 3 isoform X1 315 376 - -
Dere04g0523 475 MobiDBLite consensus disorder prediction 1 20 - -
Dere04g0523 475 SMART KNOX2_2 182 237 IPR005541 GO:0003677|GO:0005634
Dere04g0523 475 ProSiteProfiles 'Homeobox' domain profile. 314 377 IPR001356 GO:0003677
Dere04g0523 475 ProSiteProfiles ELK domain profile. 294 314 IPR005539 GO:0003677
Dere04g0523 475 SMART ELK_2 294 315 IPR005539 GO:0003677
Dere04g0523 475 Pfam KNOX1 domain 129 169 IPR005540 GO:0003677|GO:0005634
Dere04g0523 475 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 385 - -
Dere04g0523 475 MobiDBLite consensus disorder prediction 41 64 - -
Dere04g0523 475 MobiDBLite consensus disorder prediction 41 59 - -
Dere04g0523 475 Pfam ELK domain 294 315 IPR005539 GO:0003677
Dere04g0523 475 Pfam Homeobox KN domain 334 373 IPR008422 GO:0003677|GO:0006355
Dere04g0523 475 SMART KNOX1_2 126 170 IPR005540 GO:0003677|GO:0005634
Dere04g0523 475 SMART HOX_1 316 381 IPR001356 GO:0003677
Dere04g0523 475 Pfam KNOX2 domain 187 236 IPR005541 GO:0003677|GO:0005634
Dere04g0523 475 MobiDBLite consensus disorder prediction 237 261 - -
Dere04g0523 475 SUPERFAMILY Homeodomain-like 316 382 IPR009057 -
Dere04g0523 475 CDD homeodomain 317 378 IPR001356 GO:0003677
Dere04g0523 475 Gene3D - 313 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0523 Dere-ChrDere04 5276242 5280414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0523 1 395 Homeobox Transcription Factor Family AT5G25220 63.073 1.29e-178 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere04g0523 KNOX2 6.5e-20 No_clan