LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g0517	ATGAGTTCTTGGGACATTGAAGAAACAATGAAAATGAAGCTTCTTTTTATGCTTCTCCCACTTCTTCCTTTTCTTCAAGAACCCACTTGGGTTTCTGCCGCAGTTAACCCTCCTGTTTCCTCACCTCGAGTCCCACCCTTCACTCCAACATCAATGGCTGCTTTTTCTCCAGGTATTCAGGTGGCGAAGGAACAGAACCGAACAGATTCACACATAAAAATGGTAATAGTCCTCGTCGTAGCCAGCACTGCACTTGGTGCAGTCGTTTTGTCTTTTTTGTACTTCTGGGTTTATTACAGGAAGTGTTCGTCCAAACCCAACAAAAAAAATGTGCAGAGATCAGAAGCTGAGAAAGGGCTTGGCTTAGCCCCATTCGTGAGCAAATTCAGTTCTCTCAAGACGGTTGGTAAGAAGGGGTCTGTTCTAGTAATTGATTATATGACAATAGAAAAAGCGACAGACAATTTTCTGGAAAGTAACATCTTGGGTAAGGGCGGATTTGGATGTGTTTACAAGGCTCGATTAGATGATAAGTTGGATGCTGCGGTCAAGAAATTGCACTGTGAAAGTCAGAAAGCTGAGAGAGAATTTCAGAACGAGGTGGATTTCTTAAGTAAAATTCAGCATCCAAATATAATTTCTTTGCTGGGTTGTAGCATTAATGGCGACACGAGGTTTATTGTCTATGAATTGATGCAGAATGGATCCTTGGAAACTCAATTACATGGACCCTCTCATGGCTCGGCATTGACTTGGTACACGAGGATGAAGATTGCTCTTGATACAGCAAGAGGATTAGAATATCTGCATGAAAACTGTAACCCTCCAGTGATCCATAGAGATCTGAAATCATCTAATATTCTTTTAGATGCAACTTTCAATGCCAAGCTTTCCGATTTTGGTCTTGCCATAACTAATGGGTCCCAAGACAGGGATAACATAAAACTCTCTGGCACTTTGGGTTATGTAGCCCCGGAGTATCTATTAGATGGTAAACTAACCGATAAAAGCGATGTGTATGCTTTCGGAGTAGTGCTTCTGGAGCTTCTATTAGGTAGGAGGCCCGTGGAAAAACTAACATCAGCACAGTGCCAATCTATTGTCACATGGGCGATGCCACAGCTCACTGACAGATCCAAGCTTCCAAACATTGTGGATCCCGTGATCAAGAATACAATGGATCCCAAGCATTTATACCAGATTGCTGCTGTGGCTGTGCTATGCGTGCAACCAGAACCTAGTTATCGTCCACTGATTACAGATGTTCTGCACTCTCTCATCCCTCTTGTTCCTGTTGAGCTTGGAGGAACACTGAGAGTTCCGCATGTGACACAGCCTCTCTCTTCAACTCACTGA	1356	0.4322	MSSWDIEETMKMKLLFMLLPLLPFLQEPTWVSAAVNPPVSSPRVPPFTPTSMAAFSPGIQVAKEQNRTDSHIKMVIVLVVASTALGAVVLSFLYFWVYYRKCSSKPNKKNVQRSEAEKGLGLAPFVSKFSSLKTVGKKGSVLVIDYMTIEKATDNFLESNILGKGGFGCVYKARLDDKLDAAVKKLHCESQKAEREFQNEVDFLSKIQHPNIISLLGCSINGDTRFIVYELMQNGSLETQLHGPSHGSALTWYTRMKIALDTARGLEYLHENCNPPVIHRDLKSSNILLDATFNAKLSDFGLAITNGSQDRDNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRRPVEKLTSAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDPKHLYQIAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRVPHVTQPLSSTH	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g0517	451	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	277	289	IPR008271	GO:0004672\|GO:0006468
	Dere04g0517	451	FunFam	Protein kinase superfamily protein	123	231	-	-
	Dere04g0517	451	SUPERFAMILY	Protein kinase-like (PK-like)	138	426	IPR011009	-
	Dere04g0517	451	Gene3D	Transferase(Phosphotransferase) domain 1	232	431	-	-
	Dere04g0517	451	FunFam	probable receptor-like protein kinase At1g80640	232	431	-	-
	Dere04g0517	451	ProSiteProfiles	Protein kinase domain profile.	156	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g0517	451	CDD	STKc_IRAK	162	429	-	-
	Dere04g0517	451	SMART	serkin_6	156	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g0517	451	Gene3D	Phosphorylase Kinase; domain 1	125	231	-	-
	Dere04g0517	451	PANTHER	OS01G0750732 PROTEIN	55	428	-	-
	Dere04g0517	451	Pfam	Protein kinase domain	159	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g0517	451	ProSitePatterns	Protein kinases ATP-binding region signature.	162	185	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g0517	Dere-ChrDere04	5238781	5241833	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g0517	12	372	Receptor kinase-like Gene Family	AT1G80640	47.709	2.94e-99	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-X	Dere04g0517		Pkinase	2.1e-48	CL0016