Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0515 ATGGCGAGACCACAACAGCGATATCGAGGAGTCCGACAAAGGCACTGGGGCTCTTGGGTCTCAGAAATTCGGCACCCTATATTGAAGACGAGGATATGGCTTGGTACATTTGAAACGGCAGAAGATGCAGCCAGAGCGTACGATGAAGCAGCGAGGCTGATGTGTGGTCCGAGGGCTAGAACCAATTTCCCTTACAACCCCAATTTGTCTCAATCATCATCCTCAAAGCTTCTATCCGCAACTTTGACCGCTAAACTGCATAGATGCTATATGGCTTCGCTCCAAATGACGAGGCCAGCATTACCGGAGCCTCAGAGAGTAACTTCACCAAATGTTGTGTCCACAAGCACAAGCAACTCATCCTCTCTGAAAAGCAGCGAAACCAATATTACAATGTTGGGACAGAAGAAACCAAGGGAGGAGGAAGAGTTAGAAGAATCAGAGGCGAAGTGGGTTGTGCAGAAAGTGAAAGTGGAAAGTGGTGAGCAGTTCAAGCCTCTTGAAGAGGATCATATTGAGCAAATGATTGAGGAGCTTCTCGATTACGGGTCTATGGAGCTCTGCTCTGTCATGCCATCTCAGTAA 585 0.4786 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNLSQSSSSKLLSATLTAKLHRCYMASLQMTRPALPEPQRVTSPNVVSTSTSNSSSLKSSETNITMLGQKKPREEEELEESEAKWVVQKVKVESGEQFKPLEEDHIEQMIEELLDYGSMELCSVMPSQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0515 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Dere04g0515 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Dere04g0515 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Dere04g0515 194 MobiDBLite consensus disorder prediction 101 146 - -
Dere04g0515 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Dere04g0515 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Dere04g0515 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Dere04g0515 194 MobiDBLite consensus disorder prediction 102 133 - -
Dere04g0515 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 137 - -
Dere04g0515 194 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Dere04g0515 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Dere04g0515 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0515 Dere-ChrDere04 5218760 5219445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0515 1 194 AP2-EREBP Transcription Factor Family AT5G25190 63.918 1.31e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g0515 AP2 4.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0515 04 5218760 5219445 Dere04g0515 04 5218760 5219445 ECH