Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0512 ATGGAAAGAGTAAGCAACGAGCCGTATCTTTGTCGTAACCCCAGCCTACTGTGTGCTGGAGAGGCTCCTCCAAGTCCAAGTACTCCATTGCAGAACCCACAGTCAAAGAAACACCTATCTGTTGAGGAGGAAGAAGAAGAAGACAAGGACGCAAAGGTAAATTGTTCGTTGGATCTGAACGTTGCCGGTGATGATTCTCCTGGTGAGTGCAATCCAGAACTCAATCTCATCAACTGTTTAAATATGGATATGGATATGGAAAAATCTAAAACTTCATCAGAAAACCCGGGTGGTTCTGAGGCAGAGCCACGAGTATTCTCTTGCAACTACTGTCAGAGGAAGTTCTACAGTTCACAAGCGCTTGGGGGACACCAAAATGCGCATAAGAGGGAGAGGTCAATAGCGAAAAGAGGACAGAGGCAGATAATGGCCTCAGCAGCAGCATTTGGGCTTCCTTTTCTGCATAATAGTCACAGCTATACAAGTATGGCATCTTTACCCCTCCATGGTGCTGCTCGTAATAAACCTCTTGGAATTCAGGCACACTCCATGATCCACAAGCCTCCTCATGTCTCTTCTAATTATGGGTTTGGAAGCAGTTATGGACATCATGGTTGGTCAAGGCCCCTGATTGATCAACAACCCAGAGTAGGGAAACTAGAGATGGCCAATTTTCACAGAACAACATCATCAGGGTTGTCAACACGAGGCAGTGTAGGTAGGTTTGAAATGGTAAAGACGATGGTGGGTTCTGCAGTGAATGAAGAAATCAGTGGGTATTTGGTAAGCGGAACTCGTTTAAAGACTAATCAAGAAGAAACAAAGCACCTTGATTTGTCCCTCAGGCTCTAA 852 0.4531 MERVSNEPYLCRNPSLLCAGEAPPSPSTPLQNPQSKKHLSVEEEEEEDKDAKVNCSLDLNVAGDDSPGECNPELNLINCLNMDMDMEKSKTSSENPGGSEAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQRQIMASAAAFGLPFLHNSHSYTSMASLPLHGAARNKPLGIQAHSMIHKPPHVSSNYGFGSSYGHHGWSRPLIDQQPRVGKLEMANFHRTTSSGLSTRGSVGRFEMVKTMVGSAVNEEISGYLVSGTRLKTNQEETKHLDLSLRL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0512 283 FunFam Zinc finger protein 2 83 150 - -
Dere04g0512 283 MobiDBLite consensus disorder prediction 37 51 - -
Dere04g0512 283 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
Dere04g0512 283 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 283 IPR044246 GO:0009788
Dere04g0512 283 Gene3D Classic Zinc Finger 82 149 - -
Dere04g0512 283 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Dere04g0512 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Dere04g0512 283 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0512 Dere-ChrDere04 5194543 5195394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0512 25 283 C2H2 Transcription Factor Family AT5G10970 41.791 2.38e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g0512 None None None