Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0510 ATGACGGTGGAGGCGATAATGGATGATCCCAGAGACCAGTTTCCTGTAGGAATGCGTGTTCTTGCTGTTGACGATGACCCAACTTGCCTCTTGGTGTTGGAAACTCTTCTTCGAAGATGCCAATATCACGTGACGACAACTAGTCAGGCAATAACAGCGTTGAAGTTGTTGAGAGAAAACAAAAACAAGTTTGACCTGGTTATCAGTGATGTTCATATGCCAGACATGGATGGATTTAAGTTACTTGAGCTTGTAGGACTTGAGATGGACTTACCAGTCATAATGTTGTCAGCATATGGCGACACAAAGCTGGTGATGAAGGGAATTACTCATGGAGCATGCGACTATTTGTTGAAACCTGTTCGAATAGAGGAGCTAAAAAACATTTGGCAGCACGTAATCAGGAGGAAGAAGTTTGACTCAAAGGAGCAGAGCAACCCCAGCAACCAAGACAAGCCTCATTCTGGCAGCGGCAATGGACTAGCATCAGCAGGAACAAGCAATATAGATCAAAAGATGACCAAGAAAAGAAAGGATCAGGATGATGAAGAAGATGAAGACCATGAAGAAGACCCCTCAACCCAAAAGAAGCCTCGGGTTGTTTGGACAGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATCGATAAGGCTGTACCTAAAAAGATACTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGCCATCTCCAGAAATATAGGCTTTATCTGAAAAGAATAAGTTGTGTGGCAAACCAACAAGCCAATTTGGTGGCTGCCTTAGGTACTGCAGATCAATCCTATTTGAGAATGGGTTCTCTGAGTGGGCTGAGACATTTGCGAACATTGAGTGGTTCTGGACAGTTTCAGAACAATGTTTTAAGATCCTTCCCACCTAGTGGGGTAATTGGTAGACTGAACACACCTGCTGGTCTAGGTGTGCACGGGTTGCCTTCCTCAAGAAATTTTCAGTTTGATCCTGCACAGAATTTAAACAATTCCATGAATGATCCACTCAAATTCCAGTCAGCCATTGTTCATGATAACCAAAACGGTAGTGCAGTTCAGGGAATGCTAGGATCTACTGCTCCTGATCTACAGCACCATAAGCATAATGGCTTTAGTTCTGCTCAAGACCTGACCAATGCTATTGATGATAAAACAATGTTACCCATCTTAAGTGAACCACCTGATCCAACACAAGGAGTAACCTCTAGTTGCTCACGCACTCTACTTTCAAGCCTAAAAAATAACAGCTTGATGGCAGTAGCACGTTCCCGAGACACACAAGGGGGCAGAGCATATGAGAATCTGTCTTCAGTGGAGACTCAACCTTCAGAATTTTCTTTATCTGTGCTGGATCATGGTAGGTGTAGTGATAATTGGTCAGATGCTGTGCAGTCATCTGAAATCCAGCCCAGTTCTTACCCACCAAGTGGATGTTCTAGACAAATTGCTGTATCTCCTACAGATAGGTTAATTTCTACACCGTCAGATGTAGGGAGTCCAAATGGGGCTTCATCTATCACTTTACATTCCAGTCAATCCCACGATTTAATGGCAGATATACACTTACAAGGAGACATTCTTGCTAATACATCTGGGCACATAAGAAGTAATGTGCCACTTCAAGGGTGGGACGACCGAAATCAGGATGCTACTACTTACCATTCAAATGTTGTTTGTAGTTCAATGAAAACTCTGATTCCTGTAAATGGCGGTGTTAGTGGACCAGCAAGCCATACTCCAACAGAGTCAACCTTCTACAGAAACTTGGACTTTAATTTTGGTGATCCCATACAAACAAAGCACGACAGGGTCACAAAATTAGCTGAAGAGATCTCATTGAAACAAAATCGGGGGCATGTCATGGACCAGCTGAAGGCACAACAGAGTGCCATGTCTAACAATTTTGGTTCATTGGAAGACTTAGTCAGTGCAATGATGAAACAGGATCATGACAAGGTGCAATTATTAGATGGAGACTTCATATGCAACAATTACCCCGCGGGTACATCTATGTGA 2049 0.4314 MTVEAIMDDPRDQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEQSNPSNQDKPHSGSGNGLASAGTSNIDQKMTKKRKDQDDEEDEDHEEDPSTQKKPRVVWTVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANLVAALGTADQSYLRMGSLSGLRHLRTLSGSGQFQNNVLRSFPPSGVIGRLNTPAGLGVHGLPSSRNFQFDPAQNLNNSMNDPLKFQSAIVHDNQNGSAVQGMLGSTAPDLQHHKHNGFSSAQDLTNAIDDKTMLPILSEPPDPTQGVTSSCSRTLLSSLKNNSLMAVARSRDTQGGRAYENLSSVETQPSEFSLSVLDHGRCSDNWSDAVQSSEIQPSSYPPSGCSRQIAVSPTDRLISTPSDVGSPNGASSITLHSSQSHDLMADIHLQGDILANTSGHIRSNVPLQGWDDRNQDATTYHSNVVCSSMKTLIPVNGGVSGPASHTPTESTFYRNLDFNFGDPIQTKHDRVTKLAEEISLKQNRGHVMDQLKAQQSAMSNNFGSLEDLVSAMMKQDHDKVQLLDGDFICNNYPAGTSM 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0510 682 MobiDBLite consensus disorder prediction 139 198 - -
Dere04g0510 682 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Dere04g0510 682 CDD REC_typeB_ARR-like 20 134 - -
Dere04g0510 682 Gene3D - 17 155 - -
Dere04g0510 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Dere04g0510 682 SMART REC_2 18 130 IPR001789 GO:0000160
Dere04g0510 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 260 IPR045279 GO:0009736
Dere04g0510 682 FunFam Two-component response regulator 193 256 - -
Dere04g0510 682 PIRSF RR_ARR_type-B 1 681 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dere04g0510 682 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Dere04g0510 682 SUPERFAMILY CheY-like 17 141 IPR011006 -
Dere04g0510 682 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Dere04g0510 682 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Dere04g0510 682 MobiDBLite consensus disorder prediction 148 170 - -
Dere04g0510 682 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Dere04g0510 682 Gene3D - 193 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0510 Dere-ChrDere04 5181494 5185357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0510 1 327 Response Regulator Gene Family AT2G25180 67.164 4.85e-136 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere04g0510 Response_reg 5.8e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1926 05 29258918 29262110 Dere04g0510 04 5181494 5185357 CCT
Dere04g0510 04 5181494 5185357 Dere04g0510 04 5181494 5185357 ECH