Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0508 ATGAGCAGTCTGGTTGAGAGGCTTCGGGTAAGATCAGAACGCAAGCCCATTTATAACTTAGATGAGTCTGATGATGAAGCTGATATTTTGCCTGGAAAACATGGGCCGACTCAGGAAAATTTTGAGAGGATAGTCAGAAGTGATGCAAAAGAAAATTGTTGTCAAGCTTGTGGAGAAAGTGGAAATCTTTTGAACTGTGAAACATGCACTTATGCCTATCATCCTAGGTGTTTACTTCCACCACTTAAAGCTCCTTGTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCCCTTAATGATATTGACAAGATATTAGACTGCGAGATGCGCCCTACTGTGGCTAGTGAGAGTGATGCCACAACATTGGGGTCCAAACAAATCTTTGTTAAACAATATCTTGTTAAGTGGAAGGGGCTATCATATCTCCACTGCACGTGGGTGCCAGAAAAGGAGTTTCTGAAGGCTTTCAAGACACATCCTCGCCTTAAGACCAAAGTAAACAACTTCCATCGTCAAATGGCATCAGTCAATACTTCTGACGATGACTTTGTTGCCATTCGACCTGAATGGACCACAGTTGATCGGATGCTTGCTTGCAGGGGTGATGATGATGATAAGGAATATCTTGTGAAATGGAGGGAGCTTTCATATGATGAATGCTACTGGGAGTTTGAGTCTGATATTTCTGCATTTCAGCCAGAAATCGAAAAATTCAACAGATTTCAGTCTAGGTCTAGGAAGCTTAATTCTAGTAAGCAGAAAAGCAGTGTTAAGGATGGTGTTGAATCAAAGAAGCATCAGAAAGACTTTCAACAGTATGAACATAGCCCTGAATTTCTTTCGGGTGGTAAACTACATCCATATCAGCTCGAAGGCTTGAACTTCTTACGTTTTTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCTCTTTTTAAAGAGAATGTTTCTCCACATTTGGTGGTTGCTCCACTATCAACACTGCGAAACTGGGAACGTGAATTTGCAACGTGGGCACCACAAATGAATGTCGTTATGTATGTTGGATCGTCCCAAGCTCGTGCTATTATACGAGAGTATGAATTTTACTTTCCGAAGAACCAGAAGAAGATAAAGAAAAAGAAATCTGGTCAAATAGTCAGTGAAAGCAGGCAAGATAGGATCAAATTTGATGTCCTCTTGACATCATATGAGATGATCAACCTTGACACAGCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGACGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGTAGACATCGTGTGCTTTTGTCTGGGACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCATTTCCTTGACGCTGGTAAGTTTGGAAGTTTAGAGGAGTTTCAAGAACAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCACAAAATGTTGGCCCCGCATCTTCTTAGAAGGGTGAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACTCGTAATTATCAGATATTAACGCGTTGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAGTTGCGAAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTCAAGATGCCAAAGAATCTTACAAACAGCTCCTGGAATCATCAGGGAAGTTGCAATTGTTAGACAAAATGATGGTGAAACTTAAAGAGCAAGGACACAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACTTGCTAGAAGATTACTGTTCTTACAAGAATTGGCAATATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATACGGATAGATCGGTTTAATGCCAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGGGCTCATCGACTTGGACAAACTAATAAGGTGATGATTTTTAGGCTCGTAACACGAGGAAGCATTGAAGAAAGAATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATCTAGTTGTAGGAAGGCTAAAAGCTCAAAATATTAACCAGGAGGAGTTGGATGATATTATAAGGTATGGTTCCAAGGAGTTATTTGCTGATGAAAATGATGAAGCAGGCAAATCACGCCAAATTCATTACGATGATGCTGCCATAGATAGATTGCTGGATCGTGAACAAGTTGGTGATGAAGAGGCTACGATGGATGATGAAGAGGATGGATTTTTAAAGGCCTTTAAGGATCCAGGAGAAAGCTATGTGGCAAATTTTGAATATATTGACGAAGTTGAGGCTGCAGCAAAAAAGAGAGCCATGGAGAATGAAGCTGCCGTGGCAAGTACAGAAAGAGCAAAATACTGGGAGGAGTTGTTAAGAGACAGATATGAAGTGCATAAAGTTGAAGAATTGAATGCCCTGGGCAAAGGGAAGCGGAGCCGTCACAAGCAGATGGTTTCTGCTGAGGAGGATGATCTTGCTGGTCTTGAAGATGTAAGCTCTGATGGTGATGACAATTTTGAAGCGGAGCTTACTGATGATAGCACAGAGCCACATCCTCTAATGGAAGGTGAAGGAAAATCATTTCGAGTGCTTGGTTTTAATCAGAATCAAAGAGCTGCATTTGTGCAAATATTGATGAGATTTGGGATGGGTGATTATGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTATGAAGAAATTAAAGAGTATAAATATGACTTTTTCTTCAATTTGTTACTATTACACTGGTTTGAGAAATGCTTTTCCATGTTTTATAATGTCGTTACCTATCTTGTGGTGAAGTTTGCATCAGAAAATCCTGGGAGTCCACTTTTTTCAGATGAAATCTTATCTCGCTATCCAGCTTTGAAGGGTGCAAAGATTTGGAAGGAGGAGCATGATTTAGTGTTGCTGCATGCTGTGTTAAAGCATGGGTATGGAAGGTGGCAAGCTATCGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATTTGTCAGGAGTTGAACCTTCCCTTTATAAATTTACCAATACCAGGTAACGTTGGCTCTCAGACCCAAAATGGTGCAAATTTGTCCAATGCAGAAGCACCTGGTAATCAATCCAAGGAAAATGGTGGAAGTGACATAGCAGCTGATGATGGTACACTCGGTTCTGGTGATGCTAGGAGTCAAACACACTTACATCAAGAATCCTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAATTTATAAAGAAGAGGGTGCTTCTTTTGGAAAAAGGGATCAATGTCGAGTACCACAAAGAATGTTTAGGTGAACTAAAAGTAAAAGAAGTAACAAACGAAGGACTTAAACATGAACCCAAGGCTACAAATATACCAAGTTATATATCAGGGCAGACAGATACCCGAAATTTTGATCAACTGCCTCAAGTAGAAGCCATAGCTCCTGATAACATTTCTGTTGCTGATAGTGATCCAAATCGATTGAAATTGATTCAGCTTTACAATGAGATGTGCAAAGTAGTGGAGGAAGGCACCATGGCCAGAGAACCAGCAGAAGTTGACGTGAAGAACTTTCTTTCAATAGAACCCATTTCTGAAGACATCAATAGAATTCTGACACCCTTACAGCAAAGTCATCCTACTGAAGAAAAGCCATTATTAATTCCAGAGAATAAATCAGTGGCTTCACCACAAAGTGAAGTAGTGGTTTCTCAAGATGACTGCCAGCCTAAATCAGTAGGCAATGAGACAAAAGACCTGGCAATGGAGTGTCAACTTGAAAAAGAAAATAGCACTGGCCCGGTCAAAGAGACGGAAAAGCCAATTTTTTTAGAAACAAGGGGAAGTGATATAGAAATGGATGAAGCTAAGAATGATGCTGAGCTGAATGAACAGACAGAAAAATCTGACCCGGGGGTCATTTTGATGGATAATTAA 4191 0.3978 MSSLVERLRVRSERKPIYNLDESDDEADILPGKHGPTQENFERIVRSDAKENCCQACGESGNLLNCETCTYAYHPRCLLPPLKAPCPDNWRCPECVSPLNDIDKILDCEMRPTVASESDATTLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHRQMASVNTSDDDFVAIRPEWTTVDRMLACRGDDDDKEYLVKWRELSYDECYWEFESDISAFQPEIEKFNRFQSRSRKLNSSKQKSSVKDGVESKKHQKDFQQYEHSPEFLSGGKLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAIIREYEFYFPKNQKKIKKKKSGQIVSESRQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLSGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEQFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRCGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDAKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVGDEEATMDDEEDGFLKAFKDPGESYVANFEYIDEVEAAAKKRAMENEAAVASTERAKYWEELLRDRYEVHKVEELNALGKGKRSRHKQMVSAEEDDLAGLEDVSSDGDDNFEAELTDDSTEPHPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGMGDYDWKEFTSRMKQKTYEEIKEYKYDFFFNLLLLHWFEKCFSMFYNVVTYLVVKFASENPGSPLFSDEILSRYPALKGAKIWKEEHDLVLLHAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPIPGNVGSQTQNGANLSNAEAPGNQSKENGGSDIAADDGTLGSGDARSQTHLHQESSILYHFRDMQRRQVEFIKKRVLLLEKGINVEYHKECLGELKVKEVTNEGLKHEPKATNIPSYISGQTDTRNFDQLPQVEAIAPDNISVADSDPNRLKLIQLYNEMCKVVEEGTMAREPAEVDVKNFLSIEPISEDINRILTPLQQSHPTEEKPLLIPENKSVASPQSEVVVSQDDCQPKSVGNETKDLAMECQLEKENSTGPVKETEKPIFLETRGSDIEMDEAKNDAELNEQTEKSDPGVILMDN 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0508 1396 Pfam CHD subfamily II, DUF1087 845 907 IPR009463 -
Dere04g0508 1396 CDD CD1_tandem 98 172 - -
Dere04g0508 1396 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Dere04g0508 1396 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Dere04g0508 1396 SUPERFAMILY Chromo domain-like 184 242 IPR016197 -
Dere04g0508 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Dere04g0508 1396 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Dere04g0508 1396 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Dere04g0508 1396 CDD SF2_C_SNF 607 733 - -
Dere04g0508 1396 Gene3D - 278 528 IPR038718 -
Dere04g0508 1396 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Dere04g0508 1396 MobiDBLite consensus disorder prediction 894 914 - -
Dere04g0508 1396 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Dere04g0508 1396 SMART PHD_3 53 96 IPR001965 -
Dere04g0508 1396 MobiDBLite consensus disorder prediction 1344 1396 - -
Dere04g0508 1396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Dere04g0508 1396 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 57 1343 - -
Dere04g0508 1396 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 157 IPR023780 -
Dere04g0508 1396 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Dere04g0508 1396 Gene3D - 98 189 - -
Dere04g0508 1396 SMART chromo_7 99 162 IPR000953 -
Dere04g0508 1396 SMART chromo_7 190 244 IPR000953 -
Dere04g0508 1396 MobiDBLite consensus disorder prediction 247 268 - -
Dere04g0508 1396 SMART DUF1086_2 912 1036 IPR009462 GO:0003677|GO:0006338
Dere04g0508 1396 MobiDBLite consensus disorder prediction 1103 1142 - -
Dere04g0508 1396 CDD CD2_tandem 190 241 - -
Dere04g0508 1396 Pfam CHD subfamily II, SANT-like domain 928 994 IPR009462 GO:0003677|GO:0006338
Dere04g0508 1396 Gene3D - 1019 1161 - -
Dere04g0508 1396 SMART DUF1087_2 845 910 IPR009463 -
Dere04g0508 1396 Gene3D - 190 241 - -
Dere04g0508 1396 SMART ultradead3 282 496 IPR014001 -
Dere04g0508 1396 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Dere04g0508 1396 Gene3D - 529 753 IPR027417 -
Dere04g0508 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 519 IPR027417 -
Dere04g0508 1396 MobiDBLite consensus disorder prediction 1103 1125 - -
Dere04g0508 1396 MobiDBLite consensus disorder prediction 1344 1384 - -
Dere04g0508 1396 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Dere04g0508 1396 SMART helicmild6 638 722 IPR001650 -
Dere04g0508 1396 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0508 Dere-ChrDere04 5152897 5174126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0508 308 783 RAD5 or RAD16-like Gene Family AT1G02670 23.022 6.21e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere04g0508 SNF2_N 4.2e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1925 05 29221681 29257178 Dere04g0508 04 5152897 5174126 CCT