Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0507 ATGGCAACCCGAAGAACTTCAAGGCTAACCAAACCCGCTTTTGCTGCCTTAAGCGCGTCTAGGATCTCTCAAAAATCTCTCTATCATTCTCACTCTGCATTCGGTTGTCGTGAACGTGTATTGTCGGGCTTCCTTGCTTCAGCAAAGTCAAATGGTAAAAATTTCCTATCTCAAGCTCAGGTTATCAACAGTGCTGCAGAGTGTAATGTCGCCTCCGCCCAATTTCTTTCCTACTCTTTCACTCGCCAGTTCCACTCCTCTAATCCCTGGAGCCGCTCGGCTGGCAGTTCTCAGATTACCCCAACAGAATTCACAGAGCTGGCATGGGAGGGTATTATTGGTGCTATTGATGCAGCACGAGTTAGCAAACAACAAGTTGTAGAGTCTGAGCATTTAATGAAAGCCTTACTGGAGCAAAAAGATGGTCTAGCCCGACGAATATTTACCAAGGCAGGATTGGACAACACATCAGTTTTGCAGGCTACCGATGACTTCATATCTCAGCAACCAAAGGTAACGGGCGAAACTAGTGGACCTGTGATGGGTTCACATCTAGTTTCCCTCTTGGATAATGCACGAAAGCACAAGAAAGATATGGGGGATGAATATGTGTCAGTTGAGCATTTTTTGTTGGCATTTCAATCAGATAAGAGGTTTGGGCAACAATTACTCAAGAACCTTCAAATTAGCGAGAAGACTTTGAAGGATGCTATCCAAGCTGTTCGTGGAAGTCAAAGAGTGACTGATCAGAATCCCGAGGGGAAATATGAGGCGCTGGACAAGTATGGAAATGACCTGACTGAATTAGCTAGGCGTGGCAAACTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGAGGTGTATCCAGATACTTTCAAGGAGAACAAAAAATAATCCTGTAATTATTGGTGAACCTGGTGTTGGGAAAACTGCAATTGCTGAAGGATTAGCTCAAAGGATAGTGCGTGGAGATGTTCCAGAACCATTGTTGAACCGAAAGTTAATCTCCCTTGATATGGGTTCATTGGTTGCTGGTGCCAAGTATCGTGGAGACTTTGAGGAAAGGTTGAAAGCCGTTCTGAAGGAAGTTACAGCTTCAAATGGGCAAATAATTTTATTTATTGATGAGATTCATACTGTCGTTGGTGCAGGGGCTACTACTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGGCGAGGTGAACTTCGATGTATTGGAGCAACTACACTGAATGAATATAGAAAATACATTGAGAAGGATCCTGCACTTGAGCGCAGGTTTCAACAAGTTTTTTGTGGCCAACCCTCTGTTGAAGACACAATATCCATTCTTCGTGGTTTACGTGAACGCTATGAGTTGCATCATGGTGTGAAAATATCAGATAGTGCACTTGTTTCAGCTGCAGTTCTTGCAGACCGATATATCACAGAACGCTTTCTGCCAGATAAAGCCATTGATCTTGTTGATGAAGCTGCTGCGAAGTTAAAGATGGAGATTACTTCTAAGCCAACTGAATTAGATGAAATAGATAGAGCAGTCCTAAAGTTGGAGATGGAAAAACTATCCCTGAAAAATGATACTGATAAAGCATCCAAGGAAAGATTAAGTAAGCTTGAAAATGATTTGAGTTCACTTAAGCAGAAGCAGAAAGAATTAACGGAACGATGGGAACGTGAAAAGGTCCTGATGAATCGGATAAGATCAATTAAAGAAGAGATTGATAGAGTTAACCTGGAGATGGAAGCTGCTGAGCGGGAGTATGACCTGAATCGTGCTGCAGAGCTTAAGTATGGAACTCTGATGTCCCTTCAGCGCCAATTAGAGGAAGCTGAAAAGAACTTAGCTGACTTCCAAAATTCTGGACAATCTTTGCTTCGAGAAGAGGTTACTGATCTTGATATTGCTGAGATTGTAAGCAAATGGACTGGTATACCATTATCAAACCTCCAACAAACGGAAAGAGAAAAGTTGGTCTTGCTGGAACAGGTTCTTCATAAGAGGGTGGTTGGACAGGATATTGCTGTAAAATCTGTGGCTGATGCCATCCGTCGATCAAGGGCCGGATTGTCTGACCCAAATCGGCCAATTGCAAGCTTTATGTTCATGGGTCCAACTGGTGTTGGAAAAACTGAGCTTGCAAAGGCTTTGGCTGGTTACCTGTTTAACACCGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTATATGGAGAAACATGCAGTTTCACGTTTGGTTGGGGCCCCACCTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTTGTTCGTAGAAGACCTTACTCTGTGGTACTTTTTGATGAAATAGAGAAGGCACATCATGATGTCTTCAACATTTTGCTGCAGTTGTTGGATGATGGAAGGATTACCGATTCCCAAGGGAGGACTGTTAGCTTCACAAATTGTGTTGTGATAATGACTTCAAACATTGGGTCTCATTACATACTTGAAACTCTTCAGAGTACACAAGATGACAAAGATGCTGTTTATGATCAAATGAAAAGACAAGTGGTTGAGTTGGCTAGACAAACTTTCCGCCCTGAGTTCATGAATCGTATTGATGAATATATTGTTTTCCAGCCCTTGGATTCCAAGCAGATCAGCAAAATAGTTGAGCTCCAGATGGAACGGGTGAAGGACAGGCTCAAGCAAAAGAAAATTGATCTTCATTACACACCAGAAGCTGTTGAACTTCTTGGTGTATTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTTAAAAGAGTTATACAGCAATTGGTTGAGAATGAAATTGCAATGAGAGTTCTGAGGGGAGATTTTAAAGGAGAGGACTCAATTGTTGTCGATGCTGATGTGACTCCATCATCCAAGGACCTTCCAACCCAAAATAGATTGCTTATCAAAAAGTTGGAGAGCCCTGCTGTGGATGCTATGGTTGCAAATGACTAG 2967 0.4253 MATRRTSRLTKPAFAALSASRISQKSLYHSHSAFGCRERVLSGFLASAKSNGKNFLSQAQVINSAAECNVASAQFLSYSFTRQFHSSNPWSRSAGSSQITPTEFTELAWEGIIGAIDAARVSKQQVVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDDFISQQPKVTGETSGPVMGSHLVSLLDNARKHKKDMGDEYVSVEHFLLAFQSDKRFGQQLLKNLQISEKTLKDAIQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLLNRKLISLDMGSLVAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATTGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCGQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLENDLSSLKQKQKELTERWEREKVLMNRIRSIKEEIDRVNLEMEAAEREYDLNRAAELKYGTLMSLQRQLEEAEKNLADFQNSGQSLLREEVTDLDIAEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSTQDDKDAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSKQISKIVELQMERVKDRLKQKKIDLHYTPEAVELLGVLGFDPNFGARPVKRVIQQLVENEIAMRVLRGDFKGEDSIVVDADVTPSSKDLPTQNRLLIKKLESPAVDAMVAND 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0507 988 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 703 721 IPR001270 GO:0005524
Dere04g0507 988 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 748 766 IPR001270 GO:0005524
Dere04g0507 988 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 810 824 IPR001270 GO:0005524
Dere04g0507 988 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 777 795 IPR001270 GO:0005524
Dere04g0507 988 FunFam Chaperone clpB 1, putative 247 440 - -
Dere04g0507 988 Gene3D - 441 646 IPR027417 -
Dere04g0507 988 Pfam AAA domain (Cdc48 subfamily) 698 867 IPR003959 GO:0005524|GO:0016887
Dere04g0507 988 ProSitePatterns Chaperonins clpA/B signature 1. 392 404 IPR018368 GO:0005524
Dere04g0507 988 FunFam ATP-dependent chaperone ClpB 441 646 - -
Dere04g0507 988 Pfam ATPase family associated with various cellular activities (AAA) 302 434 IPR003959 GO:0005524|GO:0016887
Dere04g0507 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 647 IPR027417 -
Dere04g0507 988 SMART ClpB_D2_small_2 874 960 IPR019489 -
Dere04g0507 988 CDD AAA 279 439 - -
Dere04g0507 988 Pfam C-terminal, D2-small domain, of ClpB protein 874 954 IPR019489 -
Dere04g0507 988 SUPERFAMILY Double Clp-N motif 103 254 IPR036628 -
Dere04g0507 988 Gene3D - 651 872 IPR027417 -
Dere04g0507 988 FunFam Chaperone protein ClpB3, chloroplastic 100 246 - -
Dere04g0507 988 Pfam AAA lid domain 440 542 IPR041546 -
Dere04g0507 988 PANTHER ATP-DEPENDENT CLP PROTEASE 105 976 - -
Dere04g0507 988 NCBIfam ATP-dependent chaperone ClpB 104 957 IPR017730 GO:0005737|GO:0009408|GO:0042026
Dere04g0507 988 Pfam Clp amino terminal domain, pathogenicity island component 192 243 IPR004176 -
Dere04g0507 988 Pfam Clp amino terminal domain, pathogenicity island component 117 166 IPR004176 -
Dere04g0507 988 ProSiteProfiles Clp repeat (R) domain profile. 101 244 IPR004176 -
Dere04g0507 988 Gene3D - 874 969 - -
Dere04g0507 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 950 IPR027417 -
Dere04g0507 988 Coils Coil 532 559 - -
Dere04g0507 988 Coils Coil 510 530 - -
Dere04g0507 988 Gene3D - 100 246 IPR036628 -
Dere04g0507 988 Coils Coil 563 631 - -
Dere04g0507 988 FunFam ATP-dependent Clp protease subunit 652 872 - -
Dere04g0507 988 CDD RecA-like_ClpB_Hsp104-like 660 871 - -
Dere04g0507 988 FunFam ATP-dependent chaperone ClpB 874 963 - -
Dere04g0507 988 Gene3D - 247 440 IPR027417 -
Dere04g0507 988 SMART AAA_5 296 440 IPR003593 GO:0016887
Dere04g0507 988 SMART AAA_5 699 856 IPR003593 GO:0016887
Dere04g0507 988 ProSitePatterns Chaperonins clpA/B signature 2. 733 751 IPR028299 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0507 Dere-ChrDere04 5126218 5134943 Transposed