Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0506 ATGGCAAAGTGTCATCGGAGCAACGTTGGATCCTTGATTCTCGACCACCACGATCCTACCACGAATGCAACCGTCGGCGGCCATGTCCGCCTATGGAATGCGCTCTCGGCTTCCTCATTTCGCCGCATCATTTTTGACGCTGTGAGCTGCGGCGGCAGCTCTCGGTATCACCAACGCGACCAGGACGACTTCAGCTCCTCCGCCTCAACCACGACATCAGCCCCCGGGAGCTCGAAGGAGAAGCAGCAAGAACTGAGGCACGGAGCCTCCAAGTCTAAGCGTAAGTCCAATGCTAGGTCCGAGAAACTATCGGATCTTCTGCATATAGCGGATTCTGATATTCACGCCCAAACCAAGAAGAAGGAAGAGGGGTTGGAGGAGCTGAAGCAAATTGTGCTGGAGTTGCAGGGAGAGGATTTGATGAAGCGGCAAATGGCTGCCGCAAATGTTAGATTGCTCGCGAAGGAAAACTTGGAAAACAGAGGGACACTCGCAATGCTTGGAGTCATTCCTCCTCTGGTTGGAATGCTTGACTTGGAAGACGCTAACTCTCAAATCGCTTCGCTGTACGCGTTGCTCAATCTCGGGATCGGCAACGATGCAAATAAAGCAGCCATTGTTAAAGTTGGCGCTGTTCACAAGATGCTAAAGCTCATTGATTCTCCTACTGCTCCGGATTCATCAGTCTCTGAAGCAATTGTTGCAAATTTCCTCGGCTTGAGTGCTTTAGATTCGAACCAACCGATTATCGGACCCTCTGGTGCAATACCGTTCCTGGTTAGAGCCCTCAAAAATTTAGATAATAATTGTAGCCCTCAGGCGAAGGAAGATGCTCTCCGAGCACTGTACAATCTTTCAATCTGCCCAACCAATATCTCATTCATGTTGGAAACCGATTTGGTTCCACATCTGATAAACACAATAGGAGACATGGAAGTCAGTGAAAGAGTCCTTCCAATCCTGAGCAATCTGGTATCAACTCCAGAGGGCCGAAAAGCTGTCAGTGCTGTGCCGGATGCATTCCCAATTCTGGTTGACGTATTAAACTGGACAGATTCACCAGGATGCCAAGAGAAGGCATCCTACATTTTAATGGTTATGACTCACAAAGCCTACGGTGACAGGCAGGCCATGATTGAGGCTGGGATTGTATCGTCATTGCTTGAGTTGACGCTTCTAGGTACCACATTGGCTCAAAAAAGGGCCTCTAGGATATTGCGATGTCTGAGGGTAGACAAAGGAAAGCAGATTTCTGGGAGTTGCAGTGGAAACTTTAGTGCCAATGTCTCTGCTCCTATTTCTGACTCTTCATCATCTTGTACAAAGCCACATGGAGGCGGAAGAAAGAGTGTGGAGGAGGAGGAAGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTTCAGCAGAGTTTACAAAATAACATGAGGAAAATTGTGAAGAGGGCTAACATCCCTCAGGAATTTGTTCCATCCGAGCATTTTAAGTCACTCACTTCAAGTTCGACTTCAAAGAGCCTGCCGTTTTGA 1536 0.4805 MAKCHRSNVGSLILDHHDPTTNATVGGHVRLWNALSASSFRRIIFDAVSCGGSSRYHQRDQDDFSSSASTTTSAPGSSKEKQQELRHGASKSKRKSNARSEKLSDLLHIADSDIHAQTKKKEEGLEELKQIVLELQGEDLMKRQMAAANVRLLAKENLENRGTLAMLGVIPPLVGMLDLEDANSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIDSPTAPDSSVSEAIVANFLGLSALDSNQPIIGPSGAIPFLVRALKNLDNNCSPQAKEDALRALYNLSICPTNISFMLETDLVPHLINTIGDMEVSERVLPILSNLVSTPEGRKAVSAVPDAFPILVDVLNWTDSPGCQEKASYILMVMTHKAYGDRQAMIEAGIVSSLLELTLLGTTLAQKRASRILRCLRVDKGKQISGSCSGNFSANVSAPISDSSSSCTKPHGGGRKSVEEEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANIPQEFVPSEHFKSLTSSSTSKSLPF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0506 511 SMART arm_5 199 242 IPR000225 GO:0005515
Dere04g0506 511 SMART arm_5 157 197 IPR000225 GO:0005515
Dere04g0506 511 SMART arm_5 243 287 IPR000225 GO:0005515
Dere04g0506 511 SMART arm_5 288 326 IPR000225 GO:0005515
Dere04g0506 511 Gene3D - 268 422 IPR011989 -
Dere04g0506 511 MobiDBLite consensus disorder prediction 446 464 - -
Dere04g0506 511 MobiDBLite consensus disorder prediction 56 101 - -
Dere04g0506 511 Gene3D - 95 267 IPR011989 -
Dere04g0506 511 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 511 - -
Dere04g0506 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 254 286 IPR000225 GO:0005515
Dere04g0506 511 MobiDBLite consensus disorder prediction 1 24 - -
Dere04g0506 511 MobiDBLite consensus disorder prediction 63 79 - -
Dere04g0506 511 Coils Coil 452 472 - -
Dere04g0506 511 MobiDBLite consensus disorder prediction 80 101 - -
Dere04g0506 511 MobiDBLite consensus disorder prediction 431 465 - -
Dere04g0506 511 SUPERFAMILY ARM repeat 127 415 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0506 Dere-ChrDere04 5115945 5117968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0506 127 410 U-box Gene Family AT2G23140 32.632 3.25e-31 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1922 05 29182194 29184273 Dere04g0506 04 5115945 5117968 CCT