Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0503 ATGGACGAAGATCAAATACTGGGTTTTGTCACTGCGTACCTGAGGAAGAAAGGGTTTACGCAAACGGAGCACGCTTTTCAGGAAGAGCTTCAACAGAACAAGAACACTTCCTCCGCCAATTCTATTATCGAAGCCGACATTGCCAAGCACATCCTTGCCTTCTCCGAGTTAGAGAGTGGTCCTGCAAGATTTCATGATGGATATAGCAGACTTAGATCGTGGGCATACAGTTCACTTGATTTGTACAAGCATGAATTACTACGGGTGCTTTATCCAGTATTTATTCATTGTTTTATGGATCTTGTGGCAAAAGGGCATATTCAAGAAGCTCGGAACTTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACTTACAAGACTTGCGGAAGTTGGAAGGTGTTCTTTCTCCTTCTCATCTGGAGGAAATGGAATTCGCTCATTCCCTTAGGAAAAGCAAATTCAACATAAAGATATGTGGGTATTCCTATGATCTTCTGTTGCAACATCTACACAGTATGCAGTCCACCACTATACTTGGTATAATTAATGAGCATATTAACTTCCAAGTTACTCCTGGACAGCCTAGCTCAATTTCTGATGATCCAGAGGCTGTTACCCTCACTGGAAGCAGCCAGGATGCAGCAAACCAGATAAATCATAAAGAAATACATTGGGGGTTGCTTGAAGACTCTCTAGAAGAACGCCTGGAGAAGGCTGGTGCATTGCTTTCAGACTCTGACAAGGGGGAAGGGGAAGCCAAAGAAGGGGAGGCTGATGAGAGTAAGAAAAGATCAATTGATGGAGGAAAGCAAGGTGCTTCAATCAAGAAAGTTAAAAAGGACAAGGGTGGAAGTGCAACGGGGAAAAGTGCAAAACCTGATTCTAACACTGTAGCTGCAGCACCACGTGTTAAACCTGAACTCCCCTTGCCCACAATTCCATCAGAGGTAGAACAGTCCATCCTTGAAGATTTAAGGAACCGTGTACAATTGAGTAGTGTTGCACTGCCTTCAGTTAGCTTTTATACGTTTCTCAATACACATAATGGTTTAAGCTGCTCATCAATATCACAGGATGGATCATTGGTTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACGACAGCCCGCTGGTTCTCTTTCGCAGGGTGAGAATGACACATCACAAAATGAACAAGTACAAAGTGGTGGGAGAAGGCAATATACATTATTTCAAGGTCATTCAGGGCCAGTTTATGCTGCCACGTTTAGTCCTGTTGGAGATTTTATTCTTTCCTCTTCAGCAGACTCAACTATTAGATTATGGAACACCAAGCTTAACGCCAACCTTGTTTGCTACAAGGGTCACAACTACCATGTCTGGGATGTTCAATTTAGTCCAGTAGGGCACTATTTTGCTAGTGCCTCGCACGACAGAACTGCCAGAATTTGGTCCATGGACAGGATACAGCCTTTAAGAATAATGGCAGGGCACCTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCTACTGGTTCCAGTGACAAAACGGTTCGATTATGGGATGTACAGAGTGGGGAGTGTGTCCGGATTTTCATTGGTCATAGGAGTATGATTTTGTCCTTGGCAATGTCTCCCGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGATCTTTCTAGCGGCTGCTGCCTCACACCTTTGGTTGGTCACACCTCATGTGTCTGGACACTTGCTTTCAGCTGTGAAGGTACTCTTCTTGCTTCTGGATCCGCTGATTGCACTGTGAAATTATGGGACGTGACTACCAGTACAAAGCTTCCAAGGACTGAAGAAAAGAGTGGGAATACTAACAGACTCAGATCATTGAAAACTCTACCGACCAAGTCTACTCCAGTTTCCTCTTTGCGGTTTTCCCGGAGGAATCTTCTTTTTGCAGCTGGAGCTCTTGCAAAAAATGGTTAA 2004 0.4416 MDEDQILGFVTAYLRKKGFTQTEHAFQEELQQNKNTSSANSIIEADIAKHILAFSELESGPARFHDGYSRLRSWAYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNSFREDHEMMHLQDLRKLEGVLSPSHLEEMEFAHSLRKSKFNIKICGYSYDLLLQHLHSMQSTTILGIINEHINFQVTPGQPSSISDDPEAVTLTGSSQDAANQINHKEIHWGLLEDSLEERLEKAGALLSDSDKGEGEAKEGEADESKKRSIDGGKQGASIKKVKKDKGGSATGKSAKPDSNTVAAAPRVKPELPLPTIPSEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLSCSSISQDGSLVAGGFSDSSLKVWDMAKLGRQPAGSLSQGENDTSQNEQVQSGGRRQYTLFQGHSGPVYAATFSPVGDFILSSSADSTIRLWNTKLNANLVCYKGHNYHVWDVQFSPVGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCLTPLVGHTSCVWTLAFSCEGTLLASGSADCTVKLWDVTTSTKLPRTEEKSGNTNRLRSLKTLPTKSTPVSSLRFSRRNLLFAAGALAKNG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0503 667 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Dere04g0503 667 PRINTS G protein beta WD-40 repeat signature 516 530 IPR020472 -
Dere04g0503 667 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 378 IPR001680 GO:0005515
Dere04g0503 667 Gene3D - 336 492 IPR015943 GO:0005515
Dere04g0503 667 ProSitePatterns Trp-Asp (WD) repeats signature. 600 614 IPR019775 -
Dere04g0503 667 MobiDBLite consensus disorder prediction 242 288 - -
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515
Dere04g0503 667 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Dere04g0503 667 Gene3D TFIID subunit TAF5, NTD2 domain 41 192 IPR037264 -
Dere04g0503 667 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 662 - -
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 445 - -
Dere04g0503 667 CDD TAF5_NTD2 61 193 IPR007582 -
Dere04g0503 667 MobiDBLite consensus disorder prediction 387 405 - -
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 445 IPR001680 GO:0005515
Dere04g0503 667 SUPERFAMILY Taf5 N-terminal domain-like 50 192 IPR037264 -
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 575 - -
Dere04g0503 667 Gene3D - 493 574 IPR015943 GO:0005515
Dere04g0503 667 MobiDBLite consensus disorder prediction 242 312 - -
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 534 - -
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 616 - -
Dere04g0503 667 Pfam WD40 associated region in TFIID subunit, NTD2 domain 59 187 IPR007582 -
Dere04g0503 667 SUPERFAMILY WD40 repeat-like 339 662 IPR036322 GO:0005515
Dere04g0503 667 SMART WD40_4 448 487 IPR001680 GO:0005515
Dere04g0503 667 SMART WD40_4 338 377 IPR001680 GO:0005515
Dere04g0503 667 SMART WD40_4 532 571 IPR001680 GO:0005515
Dere04g0503 667 SMART WD40_4 406 445 IPR001680 GO:0005515
Dere04g0503 667 SMART WD40_4 574 613 IPR001680 GO:0005515
Dere04g0503 667 SMART WD40_4 490 529 IPR001680 GO:0005515
Dere04g0503 667 ProSitePatterns Trp-Asp (WD) repeats signature. 558 572 IPR019775 -
Dere04g0503 667 MobiDBLite consensus disorder prediction 384 405 - -
Dere04g0503 667 ProSitePatterns Trp-Asp (WD) repeats signature. 516 530 IPR019775 -
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 455 489 - -
Dere04g0503 667 CDD WD40 346 663 - -
Dere04g0503 667 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Dere04g0503 667 Gene3D - 575 665 IPR015943 GO:0005515
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 580 IPR001680 GO:0005515
Dere04g0503 667 Pfam WD domain, G-beta repeat 575 613 IPR001680 GO:0005515
Dere04g0503 667 Pfam WD domain, G-beta repeat 346 377 IPR001680 GO:0005515
Dere04g0503 667 Pfam WD domain, G-beta repeat 492 529 IPR001680 GO:0005515
Dere04g0503 667 Pfam WD domain, G-beta repeat 533 571 IPR001680 GO:0005515
Dere04g0503 667 Pfam WD domain, G-beta repeat 452 487 IPR001680 GO:0005515
Dere04g0503 667 Pfam WD domain, G-beta repeat 411 445 IPR001680 GO:0005515
Dere04g0503 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 496 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0503 Dere-ChrDere04 5056699 5070912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0503 329 628 Miscellaneous Gene Families AT5G08390 23.701 4.34e-19 90.1