Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0502 ATGGAGGAGAAAGATACGGTGTTTGGGAAATATGAAATTGGTAGACTTCTAGGCAGAGGGACTTTCGCCAAAGTGTACCACGGGAAAGAGATAGCCACAGGAGAAAGCGTGGCCATCAAAATCGTGAGCAAGAAGCAAGTGAAGAAAGAGGGGATGATAGAGCAAATCAAGCGTGAGATTTCGGTGATGCGCTTGGTTCGTCACCCCAACGTCGTTGAGCTCAAGGAAGTTATGGCCACCAAGACGAAGATATTCTTCGTGATGGAGTACGTTCGCGGTGGTGAGCTCTTCGCCAAGGTCGCCAGAGGCAAGCTCACGGAAGATCTCGCCCGTAAGTACTTCCAACAGTTGATCAGCGCCGTCGATTTCTGTCACAGCAGAGGCGTATCGCACCGCGATCTCAAGCCTGAAAATCTTTTGCTGGACGAGAACGAGAACCTCAAAATCTCTGACTTCGGCCTCTCGGCGTTGCCGGAACAGCTCTGGTACGATGGACTCCTCCACACCCAGTGTGGGACTCCGGCGTATGTCGCCCCTGAATTGTTGAGGAAGAAAGGGTACGATGGATCCAAGGCTGATATCTGGGCGTGTGGCGTCATTCTGTATGTATTGCTTGCTGGGTTTCTTCCTTTTCGGAACGAGAACCTCATGAGCATGTATAGCAAGGTTTTAAAAGCCGAATACCAATTTCCCCCGTGGTTTTCTGCGGAAACAAGGAGATTGATTTCGAAAATCCTCGTGGCAGATCCAGAGAAACGGATCACAATCCATGCAATTATGCAGGTCCCATGGTTTCAAAAAGGTATCTCGAGGCCACTCGCTTTTCAACTGGAAGAACCCGTTTCGGAGAAAGCCGATGAGAACGAGCTGCATAAACCAGAACCTGGAAACTCCAAAATGAAGCCGTCATCCCCCAAGTTCTTCAATGCGTTTGAGTTTATTTCGTCGATGTCTTCTGGGTTTGATTTGTCTGGGTTGTTCGAGAGCAAGAGGAAAACAGGGTCGATGTTCACATCCAAGTGTTCGGCTACGGCAATCGTGTCGAAGATTGAGAAGGTGGCGAAGGATTTGAGTTTCATGGTTGGGAATGAGAAGGGCTTCAAAATCAGGCTGCAAGGGTCGTCGGAGGGAAGGAAAGGGAAGTTGTTCGTGACGGCGGAGGTGTTCGAGGTGGCACCGGAGGTCGCCGTCGTGGAGTTATCAAAATGTTCCGGTGACACTTTGGAATATGTGAAGTTTTGCGAGGAAGAGGTAAGGCCTGCGCTGAAGGACGTTGTCTGGTCGTGGCAAGGTGACAGCCCCTGTAACGGTAACATGGCTATGGCTGCTGGTTACGGAGAAGAATGTCAGGAACAAGTAATGTAA 1365 0.4996 MEEKDTVFGKYEIGRLLGRGTFAKVYHGKEIATGESVAIKIVSKKQVKKEGMIEQIKREISVMRLVRHPNVVELKEVMATKTKIFFVMEYVRGGELFAKVARGKLTEDLARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENENLKISDFGLSALPEQLWYDGLLHTQCGTPAYVAPELLRKKGYDGSKADIWACGVILYVLLAGFLPFRNENLMSMYSKVLKAEYQFPPWFSAETRRLISKILVADPEKRITIHAIMQVPWFQKGISRPLAFQLEEPVSEKADENELHKPEPGNSKMKPSSPKFFNAFEFISSMSSGFDLSGLFESKRKTGSMFTSKCSATAIVSKIEKVAKDLSFMVGNEKGFKIRLQGSSEGRKGKLFVTAEVFEVAPEVAVVELSKCSGDTLEYVKFCEEEVRPALKDVVWSWQGDSPCNGNMAMAAGYGEECQEQVM 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0502 454 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0502 454 Gene3D Kinase associated domain 1, KA1 310 428 - -
Dere04g0502 454 CDD CIPK_C 309 423 - -
Dere04g0502 454 FunFam Non-specific serine/threonine protein kinase 4 304 - -
Dere04g0502 454 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0502 454 MobiDBLite consensus disorder prediction 284 303 - -
Dere04g0502 454 ProSiteProfiles NAF domain profile. 303 328 IPR018451 GO:0007165
Dere04g0502 454 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0502 454 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Dere04g0502 454 CDD STKc_SnRK3 10 264 - -
Dere04g0502 454 Pfam NAF domain 305 361 IPR004041 GO:0007165
Dere04g0502 454 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Dere04g0502 454 SUPERFAMILY Protein kinase-like (PK-like) 7 296 IPR011009 -
Dere04g0502 454 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Dere04g0502 454 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 423 - -
Dere04g0502 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Dere04g0502 454 FunFam Non-specific serine/threonine protein kinase 303 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0502 Dere-ChrDere04 5046737 5048101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0502 6 449 CBL-interacting serine-threonine protein kinases AT5G25110 67.627 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere04g0502 Pkinase 5.2e-75 CL0016