Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0500 ATGGAATCAACGTGCGTGGATACTTCTCTCAACCTCAACCTTGGTCCTTCTCGGCGCACAGATGTTGCGCCTGAGGCTTTGGTGCAAGAGTTGCATCGTTTAAATGGTGAGAACAAGAGGCTAACCGAGAAGCTGACCCACTTGTTTGAGAACTACAATCTTATGCAGAAGCAATTGAGCCAACTGATGAGCATGAACGCCAATAATCCCGAAAAGGACCCATCTCATCAATCAAAGAAGAGAAAGGCTGAGACTGAAAACTGTATCGATACTATGTTTAGTATTAGTGGCAATACCGAGTGCAGTACCATTACTCATGATGAAGAAATATTCAAAAGGTCAACTGCTAAGGTTTCCAAAGTTCTTGTGCGCACTCAAGCATCTGATTCTGATACTAGCTTGTACGTGAGGGATGGATATCAGTGGAGAAAATATGGTCAGAAGGTGACCAGAGATAACCCCTCTCCCAGAGCTTACTTCAAGTGCTCCTTTGCCCCGAGCTGCCCTGTGAAAAAGAGGGTGCAAAGAAGTTTAGTAGACCCAACAGTGTTGGTGGCAACTTACGAAGGAGAGCACAACCATGTGCATAATGGATGTGAATTACCAGTGGCCTCAACCCAGAGTGAAGCTGGAGCCCTTGATTCAGCTGGAAAGTCATTAATGCAACGGTGTTTGATTCAACAAATGGCTTCTTCTTTGACCAGAGATCCCAACTTCAAAGCAGCACTTGCTACCGCCATTTCCGGAAGACTTTTAGACCTTACTTCTAATTAA 774 0.4483 MESTCVDTSLNLNLGPSRRTDVAPEALVQELHRLNGENKRLTEKLTHLFENYNLMQKQLSQLMSMNANNPEKDPSHQSKKRKAETENCIDTMFSISGNTECSTITHDEEIFKRSTAKVSKVLVRTQASDSDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKRVQRSLVDPTVLVATYEGEHNHVHNGCELPVASTQSEAGALDSAGKSLMQRCLIQQMASSLTRDPNFKAALATAISGRLLDLTSN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0500 257 SMART WRKY_cls 136 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere04g0500 257 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 213 IPR044810 GO:0003700
Dere04g0500 257 SUPERFAMILY WRKY DNA-binding domain 133 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere04g0500 257 Gene3D WRKY domain 118 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere04g0500 257 Pfam WRKY DNA -binding domain 138 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere04g0500 257 Coils Coil 31 58 - -
Dere04g0500 257 ProSiteProfiles WRKY domain profile. 138 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0500 Dere-ChrDere04 5011942 5013327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0500 3 251 WRKY Transcription Factor Family AT1G80840 44.863 8.56e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere04g0500 WRKY 1.2e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1913 05 29050123 29051902 Dere04g0500 04 5011942 5013327 CCT