Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0478 ATGTGTGGTTGCAATGTTGAGTTGTTGGTTGTCATGCGAGAAAGGAATAGTACTGTGAGTGACAAAGGGACAAAAGATGCCAAAGGCCTTACGGGCCGCACCATAGCGCCTCACCGAAGGTCACCACATGCCATCAACCAAGTGGGCTCCACTTTCCAAAACGACGACCATCTGGCATCAGCTTCATCCCCACCCGCAAATTTACTCCACAGTTTTTTGGCTAAGCCTTGCCCACGTGAATTGCTACATTACACTGGAGGGCTTGGACCCTACGTTGAAGTTAATACCCTCCCTTTTCTCTCCCCCATGGCTTCCAAGCTCTGTGACTCCTGCAAATCCGCCACTGCCACCCTCTTCTGCCGTGCCGACACCGCCTTTCTCTGTCTCGGCTGCGACTCCAAGGTCCATGCTGCCAACAAGCTTGCTTCCCGTCACGCGCGCGTCTGGGTATGCGAGGTCTGCGAGCAGGCCCCTGCCCACGTTACCTGCAAGGCTGACGCCGCCGCTCTTTGCGTCACTTGCGACCGTGACATCCATTCCGCCAACCCGCTTGCTCGCCGCCACGAGCGCGTCCCCGTCACGCCCTTCTACGACCCCGTCCACTCCGTCGGTGCCCCGTCCGGCGCTGCCATCAACTTCCTTGACGACCGTTACTTCTCCGACGCCGATGCAGATGCTGATGTCAGCAGGGAAGAGGCGGAAGCGGCTTCCTGGTTGCTTCCTAACCCTTCCAACCCGAAGGTCGCGGAGAGTCCGGATCTGAACTCTGGTGAGTACGAGTTCACTGAAATGGAGCCATGTCTAGATCTGGATTTCGGGCCGGTGGATCCGAAGGTGGAAGCTCAGGAGCAGAACAGTTCCGGCACCGACGGAGTTGTACCGGTACGGAGCAAGAGTACAAATGCTCCATCCCTCAACGAACACTACTATGACATGGACTTGTCTGGGTCCAAGAATTTCGCCTACGGTTATAACAGCAGCCAATGTCTGAGCCAGAGTGTATCGTCGTCGTCGATGGAAGTAGGGGTGGTGCCAGATGCGAATGCGATATCGAACGGTTACAGCAAGACGATGATGATAAGCGAGAATCAGACGGTGCAGATATCAGCAGCAGACAGGGAAGCGAGGGTTTTGAGGTACAGGGAGAAGAGGAAGAACCGCAAGTTCGAGAAGACCATTCGCTACGCTTCCAGAAAAGCTTACGCGGAAACAAGGCCCAGGATCAAAGGAAGATTCGCCAAACGGTCGGAGGTCGAACGCTTCGGAGGATACGGTGTCGTACCAAGCTGTTGA 1293 0.5568 MCGCNVELLVVMRERNSTVSDKGTKDAKGLTGRTIAPHRRSPHAINQVGSTFQNDDHLASASSPPANLLHSFLAKPCPRELLHYTGGLGPYVEVNTLPFLSPMASKLCDSCKSATATLFCRADTAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDPVHSVGAPSGAAINFLDDRYFSDADADADVSREEAEAASWLLPNPSNPKVAESPDLNSGEYEFTEMEPCLDLDFGPVDPKVEAQEQNSSGTDGVVPVRSKSTNAPSLNEHYYDMDLSGSKNFAYGYNSSQCLSQSVSSSSMEVGVVPDANAISNGYSKTMMISENQTVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEVERFGGYGVVPSC 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0478 430 CDD Bbox1_BBX-like 107 150 - -
Dere04g0478 430 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 108 417 IPR045281 GO:0009909
Dere04g0478 430 ProSiteProfiles Zinc finger B-box type profile. 103 150 IPR000315 GO:0008270
Dere04g0478 430 SMART bboxneu5 151 193 IPR000315 GO:0008270
Dere04g0478 430 SMART bboxneu5 103 150 IPR000315 GO:0008270
Dere04g0478 430 ProSiteProfiles CCT domain profile. 373 415 IPR010402 GO:0005515
Dere04g0478 430 CDD Bbox1_BBX-like 150 193 - -
Dere04g0478 430 ProSiteProfiles Zinc finger B-box type profile. 146 193 IPR000315 GO:0008270
Dere04g0478 430 Pfam B-box zinc finger 106 145 IPR000315 GO:0008270
Dere04g0478 430 Pfam B-box zinc finger 148 193 IPR000315 GO:0008270
Dere04g0478 430 Pfam CCT motif 373 415 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0478 Dere-ChrDere04 4799005 4800484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0478 103 429 C2C2-CO-like Transcription Factor Family AT5G24930 62.155 2.09e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere04g0478 zf-B_box 5.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0478 04 4799005 4800484 Dere04g0478 04 4799005 4800484 ECH