Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0473 ATGGTTTGTGAGATGGAGAATGACTCTCTCGAGGACATGGACATCGAAGTCCTTCCTTCGATGTGGCCTGAAGATATCGGAACTGATGCTGGTAAACAATTTAATATAGAAAAGCCAGGAAAGGACCAAGATATGTTGGAAGAGGTTACAATAATGGAGGAGACAACCATAGTTGATTTCAAGCGTCTCATGGAGCTCACAAATTATACAGATAAAGGGTCTTCTCAGCTGTCCTACCTTATGAAACACTGGGAATATAAGCAAGCCAATGCTGTGCGTCTTCTCAGAGAAGAACTCGACAACCTAAGCAAACAAAGGCGAGAGGTTGAGCTGAGGAAGTTGGAGATATTGGAGGAGCATAGATTTGAGGAAGAAATCTATGGGGATAAACGCCCAGTTTCTATTTTGGATGAAGTATATGATATATGGCAAGATGTAACATGCAGGAAATGTGATGTTATTGTTCAAAACAAGAGAATTGAGACAGATGCAGAGTATGATACAATTGTATATTGGAAACAGCGGGCCCTGAATCTGGAAAAATTGTTGGAAGCAAGTGTTGAGAGAGAGCAGATACTTTCACAGAAGTTGCAAGAATGCATAAAGAATCTTGAAAAGCAGTCCTCGCCTGTAGAAGAACTATCCCAGATTCTGAAAAGGGCAGATAATTTCTTACATTTTGTACTTCAGAATGCACCCGTTGTTATTGGTCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTGCACGAGGAGGACATCATAGGAAAAACAGATGTAGAAATTTTCACAGGATCTGGTGTTAAAGAATCTCAAGATTTTAAGAGAGAAGTTCTAGAAAAAGGATTACCTGCAAAAAGGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCCTGATTTATGTAGAACCTGTCTTCAGCAAGGCAGGGGAGACGCTTGGAATAAACTATATGGGAATGGATGTCACAGATCAGGTAAGAAAAAGAGAAAGGATGGCGAAGATTCGGGAAGAGATCGCAGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACTATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGTTGGCAACCATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTCGTTAGCATGGCTGAAATTCTTTCTAGGACAAAGCTTGATCGGGAGCAAAGACAGCACTTGGATGTCATGCTTTCTTCAGGAGACTTGGTTCTTCAGCTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCAACCAAATTCCGGCCAAGAGAGGTAGTTAAGCATGTACTCCAGACTGCTGCAGCTTCACTGCAGAAAACATTAACATTAGAAGGACATGTAGCAGATGATGTACCTATTGAGGTTGTTGGAGATGTTCTAAGGATTCGGCAAATTCTCACAAATTTAGTCAGCAACGCAATCAAGTTTACTCATGAAGGCAAAGTTGGTATAAAACTTTACGTTGTGCCACAGCCATCTTTTGCAAAAGCCGAAGAAAGCCTCCAAAAGACTGGTTCAGACCAGTCAAGCATTTCAGGGAATGGGGTCAAAGAAGAGAAATATCTCCCAACTTTCCAAAATAACAGTAACCATAGTCGTGCATTGCGTAATGATGGTAGATCTCCAATTAAAAGTGAATGCTCAGTGAATAGAAATACTGAGGAGCAACATCACTCAGTTGAAACAACAGTGTGGATACGTTGTGATGTCTATGACACAGGAATTGGAATACCAGAGAAGGCTATTCCTACTTTATTTAAAAAGTACATGCAAGTCAGTGCAGACCATGCTCGAAAGTATGGTGGCACTGGGCTAGGACTAGCAATATGCAAACAATTGGTTGAATTAATGGGTGGTCGTCTTACGGTGTCTAGCAAAGAACACTCTGGTTCTACATTCACTTTCATACTGCCATGCAAGGTTTCGGCTGTTTGTAATCATTCTGATGACTCTGATGAGCTCTCAGATGCTGAGGATACCGATGCTACATCTGATGATACCACAGAGGGCTTCTTCCAATTCCAACCACCAACTTTGGGCTCTCTGTTTTCCTCCTATGGATCTAGCAGGACCCAGAAGTTATTACCTCAAGATCTTGGGTATACAACCTCGCTTAAATTCAATGGGCTTTCACAAACTTCATTCTCAATCCCATCTGATAACGTCAAATCTAAAGGAATAACTTCAGTTGAGGATGCATCCTCAGTAATCGATGGCCCAGAGATATCTGAGTCTGCATGTTCCTCGAGTCACAGCCCAGAAACAGAGAGCGAAAATATAGTTGCAAGAAACAAATCGCAAAATAGCAGCGCTGATTCCTCATATCATACGCAGGCAGGTAGAGATCGTGTAGCTGCAGTAACAGAGTCAAGCGAACCCCAACAAGCACGTCACAGTCAAAAAAGGGCAGAGAAATGCGTCACCAGCGGCGGTACATCAGAAGTAGCCAAACCAGATACAAAGCCAAAAATCCTTCTTGTTGAGGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAGACAGTTAGGTCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCAGTGCGTGCAGTTCAGCGCCAGAGTTATGACCTGATTTTAATGGATGTGTGCATGCCAGTTATGAATGGTCTGCAAGCAACAAAACTGATTCGTTCTTTTGAAGAAACAGGCAACTGGGATGCGGCAAGAAGAGCTGGAATCGAGCCAAGTCTGCCAGCTTCAGGTTTGCATAAGCTGAGCCGGATCCCCATTATTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAGTTGAACGAATGCCTTGAACAGTACTTTCAGTGA 2964 0.4184 MVCEMENDSLEDMDIEVLPSMWPEDIGTDAGKQFNIEKPGKDQDMLEEVTIMEETTIVDFKRLMELTNYTDKGSSQLSYLMKHWEYKQANAVRLLREELDNLSKQRREVELRKLEILEEHRFEEEIYGDKRPVSILDEVYDIWQDVTCRKCDVIVQNKRIETDAEYDTIVYWKQRALNLEKLLEASVEREQILSQKLQECIKNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLHEEDIIGKTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETLGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSRTKLDREQRQHLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKTLTLEGHVADDVPIEVVGDVLRIRQILTNLVSNAIKFTHEGKVGIKLYVVPQPSFAKAEESLQKTGSDQSSISGNGVKEEKYLPTFQNNSNHSRALRNDGRSPIKSECSVNRNTEEQHHSVETTVWIRCDVYDTGIGIPEKAIPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHSGSTFTFILPCKVSAVCNHSDDSDELSDAEDTDATSDDTTEGFFQFQPPTLGSLFSSYGSSRTQKLLPQDLGYTTSLKFNGLSQTSFSIPSDNVKSKGITSVEDASSVIDGPEISESACSSSHSPETESENIVARNKSQNSSADSSYHTQAGRDRVAAVTESSEPQQARHSQKRAEKCVTSGGTSEVAKPDTKPKILLVEDNKINVMVTQSMMRQLGHSIDVVNNGVEAVRAVQRQSYDLILMDVCMPVMNGLQATKLIRSFEETGNWDAARRAGIEPSLPASGLHKLSRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLNECLEQYFQ 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0473 987 Gene3D - 436 669 IPR036890 -
Dere04g0473 987 SUPERFAMILY CheY-like 845 987 IPR011006 -
Dere04g0473 987 CDD HATPase_EvgS-ArcB-TorS-like 486 663 - -
Dere04g0473 987 Coils Coil 92 119 - -
Dere04g0473 987 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 7 985 - -
Dere04g0473 987 CDD HisKA 369 431 IPR003661 GO:0000155|GO:0007165
Dere04g0473 987 FunFam Histidine kinase 5 212 347 - -
Dere04g0473 987 PRINTS Bacterial sensor protein C-terminal signature 590 604 IPR004358 GO:0016310|GO:0016772
Dere04g0473 987 PRINTS Bacterial sensor protein C-terminal signature 649 662 IPR004358 GO:0016310|GO:0016772
Dere04g0473 987 PRINTS Bacterial sensor protein C-terminal signature 625 643 IPR004358 GO:0016310|GO:0016772
Dere04g0473 987 ProSiteProfiles Response regulatory domain profile. 847 986 IPR001789 GO:0000160
Dere04g0473 987 SMART REC_2 846 982 IPR001789 GO:0000160
Dere04g0473 987 Pfam Response regulator receiver domain 848 915 IPR001789 GO:0000160
Dere04g0473 987 ProSiteProfiles Histidine kinase domain profile. 377 665 IPR005467 -
Dere04g0473 987 CDD REC_hyHK_CKI1_RcsC-like 848 982 - -
Dere04g0473 987 Pfam His Kinase A (phospho-acceptor) domain 372 435 IPR003661 GO:0000155|GO:0007165
Dere04g0473 987 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 424 663 IPR036890 -
Dere04g0473 987 MobiDBLite consensus disorder prediction 757 843 - -
Dere04g0473 987 Gene3D PAS domain 209 347 - -
Dere04g0473 987 MobiDBLite consensus disorder prediction 546 578 - -
Dere04g0473 987 MobiDBLite consensus disorder prediction 765 801 - -
Dere04g0473 987 FunFam Putative histidine kinase 5 358 435 - -
Dere04g0473 987 Gene3D - 358 435 - -
Dere04g0473 987 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 481 662 IPR003594 -
Dere04g0473 987 SMART HKATPase_4 481 665 IPR003594 -
Dere04g0473 987 FunFam Histidine kinase 5 840 987 - -
Dere04g0473 987 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 435 IPR036097 GO:0000155|GO:0007165
Dere04g0473 987 Coils Coil 187 207 - -
Dere04g0473 987 MobiDBLite consensus disorder prediction 546 560 - -
Dere04g0473 987 SMART HisKA_10 370 435 IPR003661 GO:0000155|GO:0007165
Dere04g0473 987 FunFam Probable histidine kinase 1 556 668 - -
Dere04g0473 987 MobiDBLite consensus disorder prediction 674 699 - -
Dere04g0473 987 Gene3D - 839 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0473 Dere-ChrDere04 4771675 4776272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0473 1 987 Histidine Kinase Gene Family AT5G10720 59.013 0.0 1138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere04g0473 HATPase_c 2.1e-28 CL0025