LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g0473	ATGGTTTGTGAGATGGAGAATGACTCTCTCGAGGACATGGACATCGAAGTCCTTCCTTCGATGTGGCCTGAAGATATCGGAACTGATGCTGGTAAACAATTTAATATAGAAAAGCCAGGAAAGGACCAAGATATGTTGGAAGAGGTTACAATAATGGAGGAGACAACCATAGTTGATTTCAAGCGTCTCATGGAGCTCACAAATTATACAGATAAAGGGTCTTCTCAGCTGTCCTACCTTATGAAACACTGGGAATATAAGCAAGCCAATGCTGTGCGTCTTCTCAGAGAAGAACTCGACAACCTAAGCAAACAAAGGCGAGAGGTTGAGCTGAGGAAGTTGGAGATATTGGAGGAGCATAGATTTGAGGAAGAAATCTATGGGGATAAACGCCCAGTTTCTATTTTGGATGAAGTATATGATATATGGCAAGATGTAACATGCAGGAAATGTGATGTTATTGTTCAAAACAAGAGAATTGAGACAGATGCAGAGTATGATACAATTGTATATTGGAAACAGCGGGCCCTGAATCTGGAAAAATTGTTGGAAGCAAGTGTTGAGAGAGAGCAGATACTTTCACAGAAGTTGCAAGAATGCATAAAGAATCTTGAAAAGCAGTCCTCGCCTGTAGAAGAACTATCCCAGATTCTGAAAAGGGCAGATAATTTCTTACATTTTGTACTTCAGAATGCACCCGTTGTTATTGGTCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTGCACGAGGAGGACATCATAGGAAAAACAGATGTAGAAATTTTCACAGGATCTGGTGTTAAAGAATCTCAAGATTTTAAGAGAGAAGTTCTAGAAAAAGGATTACCTGCAAAAAGGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCCTGATTTATGTAGAACCTGTCTTCAGCAAGGCAGGGGAGACGCTTGGAATAAACTATATGGGAATGGATGTCACAGATCAGGTAAGAAAAAGAGAAAGGATGGCGAAGATTCGGGAAGAGATCGCAGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACTATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGTTGGCAACCATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTCGTTAGCATGGCTGAAATTCTTTCTAGGACAAAGCTTGATCGGGAGCAAAGACAGCACTTGGATGTCATGCTTTCTTCAGGAGACTTGGTTCTTCAGCTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCAACCAAATTCCGGCCAAGAGAGGTAGTTAAGCATGTACTCCAGACTGCTGCAGCTTCACTGCAGAAAACATTAACATTAGAAGGACATGTAGCAGATGATGTACCTATTGAGGTTGTTGGAGATGTTCTAAGGATTCGGCAAATTCTCACAAATTTAGTCAGCAACGCAATCAAGTTTACTCATGAAGGCAAAGTTGGTATAAAACTTTACGTTGTGCCACAGCCATCTTTTGCAAAAGCCGAAGAAAGCCTCCAAAAGACTGGTTCAGACCAGTCAAGCATTTCAGGGAATGGGGTCAAAGAAGAGAAATATCTCCCAACTTTCCAAAATAACAGTAACCATAGTCGTGCATTGCGTAATGATGGTAGATCTCCAATTAAAAGTGAATGCTCAGTGAATAGAAATACTGAGGAGCAACATCACTCAGTTGAAACAACAGTGTGGATACGTTGTGATGTCTATGACACAGGAATTGGAATACCAGAGAAGGCTATTCCTACTTTATTTAAAAAGTACATGCAAGTCAGTGCAGACCATGCTCGAAAGTATGGTGGCACTGGGCTAGGACTAGCAATATGCAAACAATTGGTTGAATTAATGGGTGGTCGTCTTACGGTGTCTAGCAAAGAACACTCTGGTTCTACATTCACTTTCATACTGCCATGCAAGGTTTCGGCTGTTTGTAATCATTCTGATGACTCTGATGAGCTCTCAGATGCTGAGGATACCGATGCTACATCTGATGATACCACAGAGGGCTTCTTCCAATTCCAACCACCAACTTTGGGCTCTCTGTTTTCCTCCTATGGATCTAGCAGGACCCAGAAGTTATTACCTCAAGATCTTGGGTATACAACCTCGCTTAAATTCAATGGGCTTTCACAAACTTCATTCTCAATCCCATCTGATAACGTCAAATCTAAAGGAATAACTTCAGTTGAGGATGCATCCTCAGTAATCGATGGCCCAGAGATATCTGAGTCTGCATGTTCCTCGAGTCACAGCCCAGAAACAGAGAGCGAAAATATAGTTGCAAGAAACAAATCGCAAAATAGCAGCGCTGATTCCTCATATCATACGCAGGCAGGTAGAGATCGTGTAGCTGCAGTAACAGAGTCAAGCGAACCCCAACAAGCACGTCACAGTCAAAAAAGGGCAGAGAAATGCGTCACCAGCGGCGGTACATCAGAAGTAGCCAAACCAGATACAAAGCCAAAAATCCTTCTTGTTGAGGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAGACAGTTAGGTCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCAGTGCGTGCAGTTCAGCGCCAGAGTTATGACCTGATTTTAATGGATGTGTGCATGCCAGTTATGAATGGTCTGCAAGCAACAAAACTGATTCGTTCTTTTGAAGAAACAGGCAACTGGGATGCGGCAAGAAGAGCTGGAATCGAGCCAAGTCTGCCAGCTTCAGGTTTGCATAAGCTGAGCCGGATCCCCATTATTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAGTTGAACGAATGCCTTGAACAGTACTTTCAGTGA	2964	0.4184	MVCEMENDSLEDMDIEVLPSMWPEDIGTDAGKQFNIEKPGKDQDMLEEVTIMEETTIVDFKRLMELTNYTDKGSSQLSYLMKHWEYKQANAVRLLREELDNLSKQRREVELRKLEILEEHRFEEEIYGDKRPVSILDEVYDIWQDVTCRKCDVIVQNKRIETDAEYDTIVYWKQRALNLEKLLEASVEREQILSQKLQECIKNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLHEEDIIGKTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETLGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSRTKLDREQRQHLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKTLTLEGHVADDVPIEVVGDVLRIRQILTNLVSNAIKFTHEGKVGIKLYVVPQPSFAKAEESLQKTGSDQSSISGNGVKEEKYLPTFQNNSNHSRALRNDGRSPIKSECSVNRNTEEQHHSVETTVWIRCDVYDTGIGIPEKAIPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHSGSTFTFILPCKVSAVCNHSDDSDELSDAEDTDATSDDTTEGFFQFQPPTLGSLFSSYGSSRTQKLLPQDLGYTTSLKFNGLSQTSFSIPSDNVKSKGITSVEDASSVIDGPEISESACSSSHSPETESENIVARNKSQNSSADSSYHTQAGRDRVAAVTESSEPQQARHSQKRAEKCVTSGGTSEVAKPDTKPKILLVEDNKINVMVTQSMMRQLGHSIDVVNNGVEAVRAVQRQSYDLILMDVCMPVMNGLQATKLIRSFEETGNWDAARRAGIEPSLPASGLHKLSRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLNECLEQYFQ	987

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g0473	987	Gene3D	-	436	669	IPR036890	-
	Dere04g0473	987	SUPERFAMILY	CheY-like	845	987	IPR011006	-
	Dere04g0473	987	CDD	HATPase_EvgS-ArcB-TorS-like	486	663	-	-
	Dere04g0473	987	Coils	Coil	92	119	-	-
	Dere04g0473	987	PANTHER	TWO-COMPONENT HISTIDINE PROTEIN KINASE	7	985	-	-
	Dere04g0473	987	CDD	HisKA	369	431	IPR003661	GO:0000155\|GO:0007165
	Dere04g0473	987	FunFam	Histidine kinase 5	212	347	-	-
	Dere04g0473	987	PRINTS	Bacterial sensor protein C-terminal signature	590	604	IPR004358	GO:0016310\|GO:0016772
	Dere04g0473	987	PRINTS	Bacterial sensor protein C-terminal signature	649	662	IPR004358	GO:0016310\|GO:0016772
	Dere04g0473	987	PRINTS	Bacterial sensor protein C-terminal signature	625	643	IPR004358	GO:0016310\|GO:0016772

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g0473	Dere-ChrDere04	4771675	4776272	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g0473	1	987	Histidine Kinase Gene Family	AT5G10720	59.013	0.0	1138

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Dere04g0473		HATPase_c	2.1e-28	CL0025

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