Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0471 ATGGAATCGGAGGATATGGTGAAACAGCAATTGGAGGAATTGCAGAAACATTTGGGGAAGAAGCAAAAGTTCGAGGACGCTGTCTTCTCTCTCAAATCCCTCCTTCAACAGAAATATCCGTCCGCTTCTCCCTCTCTCCGCAAATCCTTTTATTCGGCCATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAGCACCGGGTTTCTGGAATGCCGGGCTGGGGCTTTTTGAGCAGGCTGAATTACTTCTTTCTGATCCTTCTGAGAAGGAACACTTGAAGGGTTGCGTTGCTCAGGCAAGGGAACAGTTGCATCTTGAGGATAATCCGTCCCAAGCTTCACAGCCTGCACAGAGTTCTGCAAATGGAGGGTATCTTTTCGAGGGACACCTTACCGTAGATCCAGAGCCACCACAGCCTCAATGGCTGGTGCAATCAAACCTCTTGACAGCAGCTGCTACGCTATTTGCTGCTGAATCTTCTCAAGGTTTAGCGGCAGATGATACCTCACCGGAAAATGCTGCAAATATGCTTCAGGATCTTATGAATAGATTAGAAGATGTTGTGCCGCTGATGCTGAGTGATGGTCCAGTAGCTCCAAGAGTACCTCCTGCTAGTAAAGAAGTTGTGGCAAAACTTCCAGTCATTACTCTTACAGAGGAAACCCTGGCTAAGCTGGGGAAAGATGCCGAGTGTGCAATTTGCAAAGAAAACTTGGTTCTAGATGACAAAATGCAAGAGTTGCCTTGCAAGCACACGTTCCACCCACCTTGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCAATATGTCGGTATGAGCTGCGAACTGATGACCATGCCTATGAGAGCTGGAAGGAACGTGAGAAGGAAGCAGAAGAAGAGAGGAAAGGTGCCGAAAATGCCATTCGTGGTGGCGAGTACATGTATGTTTAG 942 0.4766 MESEDMVKQQLEELQKHLGKKQKFEDAVFSLKSLLQQKYPSASPSLRKSFYSAICRVATVLKTRYTAPGFWNAGLGLFEQAELLLSDPSEKEHLKGCVAQAREQLHLEDNPSQASQPAQSSANGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAATLFAAESSQGLAADDTSPENAANMLQDLMNRLEDVVPLMLSDGPVAPRVPPASKEVVAKLPVITLTEETLAKLGKDAECAICKENLVLDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELRTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0471 313 MobiDBLite consensus disorder prediction 108 132 - -
Dere04g0471 313 Coils Coil 284 304 - -
Dere04g0471 313 Pfam Ring finger domain 232 274 IPR001841 -
Dere04g0471 313 SMART ring_2 233 273 IPR001841 -
Dere04g0471 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 277 - -
Dere04g0471 313 SUPERFAMILY RING/U-box 227 280 - -
Dere04g0471 313 Coils Coil 7 27 - -
Dere04g0471 313 FunFam E3 ubiquitin-protein ligase RNF181 196 280 - -
Dere04g0471 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
Dere04g0471 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Dere04g0471 313 MobiDBLite consensus disorder prediction 108 123 - -
Dere04g0471 313 CDD RING-H2_RNF126-like 232 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0471 Dere-ChrDere04 4728575 4730710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0471 7 313 C3H Transcription Factor Family AT5G20910 67.101 3.28e-135 384