Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0463 ATGGCGTCTCCAAACACCGAGCCCGATGAGAGAAATGAGTGTTTCAAGTACAAAGGTGTGAGGAAGCGAAAATGGGGAAAATGGGTATCTGAAATCAGACTTCCGAATAGCCGCGAGCGCATATGGCTTGGGTCTTACGACTCGGCTCAGAAAGCCGCTCGGGCCTTCGATGCAGCACTGTTCTGTCTACGTGGTGATCGCGCCAATTTCAATTTCCCTGATACTCCTTTCCAGTTTCATCTTCCTCCTGAGCTTCATCACCAATCTCTCTCTCCTCACCAAATTCAACTGCTTGCTGCCACCTTTGCCAACCAGCCGCGGCAGCTTGACCCGGACCCGACTCGCCAAGAATTTCATTCGCATACAGTGACACTGACGGAGACAGCTTCTGCTAGTTCCACCTCTTCCTCATCCCCATCCTCTTGTGTGCAATCGGACCACGGTGACGCCGCGAGCAGCATAGATTGGTCATTTTTGAAGCCGTTGGATTCCGATGACCTAGTTGCCTCCGATTATGGACTCTTCTCTGAGTTTGGTGAGTTTAATCAGTTATATGATCTAACAACCCCACCTGTAGCCTTCGACCACAATACTCAAGAATATCAAACCGACGATGCTTTGTCTCACCATTCATTCCTTTGGAACTTCGGATATGAGCCTCTATAG 666 0.4955 MASPNTEPDERNECFKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAQKAARAFDAALFCLRGDRANFNFPDTPFQFHLPPELHHQSLSPHQIQLLAATFANQPRQLDPDPTRQEFHSHTVTLTETASASSTSSSSPSSCVQSDHGDAASSIDWSFLKPLDSDDLVASDYGLFSEFGEFNQLYDLTTPPVAFDHNTQEYQTDDALSHHSFLWNFGYEPL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0463 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 163 - -
Dere04g0463 221 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Dere04g0463 221 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Dere04g0463 221 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Dere04g0463 221 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Dere04g0463 221 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Dere04g0463 221 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Dere04g0463 221 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Dere04g0463 221 FunFam Ethylene-responsive transcription factor 2 16 74 - -
Dere04g0463 221 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Dere04g0463 221 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0463 Dere-ChrDere04 4668711 4669376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0463 16 216 AP2-EREBP Transcription Factor Family AT1G19210 41.148 6.67e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g0463 AP2 6.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0463 04 4668711 4669376 Dere04g0463 04 4668711 4669376 ECH