Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0460 ATGGGTGGTGGTAGAGTTGAAGCTGTGAGTAGCAAGGGATGCTCTGGACTGTTTTCCCCTTCAATGCCTTCATTCAGGGGTTTGCATCTGCAACCGTTGGAGCCAGTGACTCCTGTTTCATCCTCCCTCGGTTCTGAACCAGTGGAAATGCAATCAAGTGCTCCTTTTGCTGGTCTTGTTATATGCGTGACTGGTCTATCTAAAGAAGCAAGGAAACAGGTCATGGATGCTACAGAGAAATTAGGTGGTCATTATAGCCCCCATCTGCATCCTCAATGCACCCATTTGGTGTTTGAGCATGCGCTGAAGCACGGAGCAAGAAATGGTCTTTTTGTTGTTACACTGGGTTGGTTTGTGGATAGTGTTCGAAAAACTGTGAGATTGAGTGAATCACTTTACAGTGTGAAGAATTATGGCGATAAGCATATGCGCTTGGATGATTATAAACTGCTTGCTGGGTATACATATGCTGAAAATTCTTGCCTTCCTGCAAGAATTCGTGAAACCAAGCAAGCAGATAGAGTTGAAGAATTTCAAAGATTTTCTGGGAGAGAGTCTAGCAAGAATGTGGACTTGACTTTATCTGGTTGCTCCATCTATGTTGATCCAGACATCTCACCTGAATTGCAGAATAAGGTTGTTGAGACTGCTTCCAGAGAAGGTGCCAGTTTGGTGGAACAGTGGTCTGTTGGTTGCAATGCTAGTCATGTAGTCACTGAAGGGACATCCATTCAAAGATATCTTGGATACTCTAGTAACTTCATTACACCACTGTGGATTCTGAAATCAGCTAAGGAGAAACAAGTGCAAAGGCTTGTTCACATGTCTGCTGATTTGGCGAGGCAAGTAGGTTTGATGCTTGAGGACATTCATGATGGCATTGCAGGGGAGGAATCACTTAAGCAAGATCTCCCTGAAGATTTTCACGGGGTTAAAAGTAAAGTAAATTTCCAAGAAAGGCAACAGATTGTGAAGTCTGCAAAAATTGGTGTCAGAAATCGCCGTGGCCGTCGAATGCAGACTTGTCAGACTCCCATGCGTCCTATAACGCCCAACAACCTTCTGGATTCTATCTGTTGGTCAATATCTGAAGCAACTTCAACAGCTTCCATTTACACCGACTCCTTAAGTGTTGAAGACCCTAGTGAAAATCGTTCTTCAGTGTTTTTTGATTCTAAAGGGGTTCTCAAAGATTCAGAAGCTTCATTTTCAAACTCCACTCGACCTCTAACGGAAAGTGAGAAATCTGAATTGATATTTAAAAACCATTTTCTTACCATCCTACTTCCGATTGATCGATTTGCTGAGATGGGTCCTTCCTCAAGAACATTCTTCAGCCATAACGGCTTTACATGCCTACAGGTTTTGGATCATATCTATGCATTTTATCAGGAGAATCTGTCGGCCCATGAAATAGAAGCTGCAATTCATAGTGATTCGAGACATGCTGATAGGCTTCGATCAGTGTACTCCAGTAAAGAAACAGCAGAGCGCGGGTTTGTGATTTTCAAAAGGATTGATTTCTTGGGTTGTCGCACGAGTTTTGAAATGTTGAAACGTGTGACTGGGGACAACAACTCTAATGTCTATGAACTATTACTCAGGGCCTAA 1611 0.4283 MGGGRVEAVSSKGCSGLFSPSMPSFRGLHLQPLEPVTPVSSSLGSEPVEMQSSAPFAGLVICVTGLSKEARKQVMDATEKLGGHYSPHLHPQCTHLVFEHALKHGARNGLFVVTLGWFVDSVRKTVRLSESLYSVKNYGDKHMRLDDYKLLAGYTYAENSCLPARIRETKQADRVEEFQRFSGRESSKNVDLTLSGCSIYVDPDISPELQNKVVETASREGASLVEQWSVGCNASHVVTEGTSIQRYLGYSSNFITPLWILKSAKEKQVQRLVHMSADLARQVGLMLEDIHDGIAGEESLKQDLPEDFHGVKSKVNFQERQQIVKSAKIGVRNRRGRRMQTCQTPMRPITPNNLLDSICWSISEATSTASIYTDSLSVEDPSENRSSVFFDSKGVLKDSEASFSNSTRPLTESEKSELIFKNHFLTILLPIDRFAEMGPSSRTFFSHNGFTCLQVLDHIYAFYQENLSAHEIEAAIHSDSRHADRLRSVYSSKETAERGFVIFKRIDFLGCRTSFEMLKRVTGDNNSNVYELLLRA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0460 536 CDD BRCT_TopBP1_rpt2_like 55 124 - -
Dere04g0460 536 SMART BRCT_7 191 267 IPR001357 -
Dere04g0460 536 SMART BRCT_7 53 125 IPR001357 -
Dere04g0460 536 Pfam twin BRCT domain 59 102 IPR001357 -
Dere04g0460 536 ProSiteProfiles BRCT domain profile. 189 269 IPR001357 -
Dere04g0460 536 ProSiteProfiles BRCT domain profile. 51 135 IPR001357 -
Dere04g0460 536 Pfam Family of unknown function (DUF6699) 445 520 IPR046522 -
Dere04g0460 536 SUPERFAMILY BRCT domain 58 146 IPR036420 -
Dere04g0460 536 Gene3D BRCT domain 54 137 IPR036420 -
Dere04g0460 536 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 4 536 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0460 47 135 Core DNA Replication Machinery Family AT1G77320 37.234 7.10e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0460 04 4625264 4631061 Dere04g0460 04 4625264 4631061 ECH