Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0446 ATGGATCCACTGAGCAGTCACGGGCGGAAGAAGGAACCTTGCAGAGGAGCCTGGACGCCTGAGGAAGACCAGAAATTGGTTCAAGTCATTGAATTACATGGCCCCAAGAGGTGGAAGGTTATAGCTGCCAAAGCAGGTCTAAATCGATGCGGCAAGAGTTGCAGATTGAGATGGGTAAATTACCTCAGACCCAACATCAAGCATGGCAATATATCAGACCAAGAGGAGGACTTAATCCTCAGGCTTCATAAACTCCTAGGAAACAGGTGGTCTTTGATAGCTGGAAGACTCCCGGGTCGAACTGATAATGAGATTAAGAATTACTGGAACTCTCATTTGAGCAAGAAGATAAATCCGAGGAAACAAAAGAGAGGTTTAAAAGCCGAGTCCACGTTGGAGATAACTAAAGCACCCAACATGGCTGATGCTAGTAGTAATAAAGAACAGGGTACGTCTAAGGTCGTGGAGGACTCAAAGTCTGGCTTTGTTGAACACCAAGACTTCTCTCCTTGTGGCAGCGACGGTCCACTAAATTTGGAGTGGGTGAGTAAATTTCTAGAAATGGACGAAACTTGGCTTGGATTCGCTGATACTTGA 597 0.4573 MDPLSSHGRKKEPCRGAWTPEEDQKLVQVIELHGPKRWKVIAAKAGLNRCGKSCRLRWVNYLRPNIKHGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKINPRKQKRGLKAESTLEITKAPNMADASSNKEQGTSKVVEDSKSGFVEHQDFSPCGSDGPLNLEWVSKFLEMDETWLGFADT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0446 198 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dere04g0446 198 FunFam MYB-related transcription factor 14 67 - -
Dere04g0446 198 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Dere04g0446 198 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dere04g0446 198 Gene3D - 14 67 - -
Dere04g0446 198 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 9 150 - -
Dere04g0446 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
Dere04g0446 198 MobiDBLite consensus disorder prediction 137 151 - -
Dere04g0446 198 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere04g0446 198 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Dere04g0446 198 CDD SANT 72 113 IPR001005 -
Dere04g0446 198 Gene3D - 71 142 - -
Dere04g0446 198 MobiDBLite consensus disorder prediction 136 158 - -
Dere04g0446 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Dere04g0446 198 CDD SANT 17 62 IPR001005 -
Dere04g0446 198 SMART sant 14 64 IPR001005 -
Dere04g0446 198 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0446 Dere-ChrDere04 4466446 4467217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0446 4 152 MYB Transcription Factor Family AT5G40330 52.349 6.33e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere04g0446 Myb_DNA-binding 3.2e-19 CL0123