Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0425 ATGTCGACGGTGTACGTTTTAGAACCGCCGACGAAAGGGAAGGTGGTGGTGAACACGACGCACGGTCCGCTTGACATTGAGCTATGGCCCAAGGAAGCCCCCAAGGCCGTCAGGAACTTCGTGCAGCTCTGCCTTGAAGGCTACTACCATGACACCATCTTTCACCGTATCATCAAGGACTTTCTTGTCCAGGGTGGCGATCCCACTGGCAGCGGCACAGGGGGTGAAAGTGTCTATGGGAGTGTCTTCTCTGATGAATTTCATTCGCGTCTAAGATTTAAACATAGAGGGTTAGTTGCAATGGCAAATGCTGGGTCCCCCAATTCCAATGGGAGTCAATTTTTCATAACTCTGGATCGTTGTGACTGGCTTGATCGGAAGCATACAATTTTTGGAAAGGTGACAGGAGATACTATATATAATCTTTTGAGACTGGGTGAACTTGAAACTGATAAGGATGATCGGCCTTTAGATTCCCCAAAGATATTATCAGTTGAGGTGTTATGGAACCCAGTTGATGATATTGTTCCCAGAACACTTCAACCTCAGATTCAAACTACTACTGATACAGACAGTAAGGATTCAAAGAAAAAAGCTGTGAAAAAATTAAACTTGCTTTCATTTGGAGAAGAAGCTGAAGAAGAGGAAAAGGAACTGGCATCTGTAAAGCAAAAAATTAAGAGCAGTCATGATGTATTGAATGATCCTCGTCTTCTGAAGGAAGCAACTCTTAATAATGAATTGGGCTCAACTGGTGGTAAGTCAACAAGAGATGTGCAGTTATCTGTAAGGGATGCGCTAAATTTAAAGAAAGAAGAGTCTCAGAAAAATTCAGAAGCTAATAACCTGACCAGCCTTGATTACAGCGATGATGATGATGATGAAGCAGACTTTGATGCCAGAATGCGCAGTCAAATACTAAAGAAACGCCAAGAGTTAGGTGATCTACCACCCAAGCCAAAGCTGCGAAATGGAAGCTCTAGCCCAAAGAACCACAGTTCATCAGCAACCAGGTCCAATGCTGTAAGTGTTGAAGATGATCAACCTAGGATGGAAAAATTGTCTATAAAGAAAAAGGGAATAGGATCAGAAGCAAGAGCTGAACAAATGGCTAATGCAGATGCAGATTTACAATTGTTGAATGAAGCTGAGAAAGGCAGGCAGTTGCAGAAGCAGAAGAAACGTAGACTTCAAGGACGTGAAGATGAAGTTCTAGCAAAACTAGAGAAATTTAAGAAGGCTTTATCGGAAAAGACTAAACCTCCGACTGGTGGATCTGAAGATGTAAATGGTGAGGATTTGTCGGACTGGAGAGGTGTTAGCTTAAAATTTGCACCTGCGTCTGGCAAGGATCGGATGTCTCGCAGTGATGACCCGAATGACTATGTTGTGCATGACCCTCTTTTGGAGAAGGGAAAAGAGAAGTTCAATAGGATGCAAGCCAAACTAAAGAGACGAGAGCGGGAGTGGGCTGGGAAATCCCTCACTTGA 1491 0.4353 MSTVYVLEPPTKGKVVVNTTHGPLDIELWPKEAPKAVRNFVQLCLEGYYHDTIFHRIIKDFLVQGGDPTGSGTGGESVYGSVFSDEFHSRLRFKHRGLVAMANAGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTIYNLLRLGELETDKDDRPLDSPKILSVEVLWNPVDDIVPRTLQPQIQTTTDTDSKDSKKKAVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEATLNNELGSTGGKSTRDVQLSVRDALNLKKEESQKNSEANNLTSLDYSDDDDDEADFDARMRSQILKKRQELGDLPPKPKLRNGSSSPKNHSSSATRSNAVSVEDDQPRMEKLSIKKKGIGSEARAEQMANADADLQLLNEAEKGRQLQKQKKRRLQGREDEVLAKLEKFKKALSEKTKPPTGGSEDVNGEDLSDWRGVSLKFAPASGKDRMSRSDDPNDYVVHDPLLEKGKEKFNRMQAKLKRREREWAGKSLT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0425 496 Coils Coil 205 232 - -
Dere04g0425 496 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Dere04g0425 496 MobiDBLite consensus disorder prediction 308 438 - -
Dere04g0425 496 Gene3D - 2 182 IPR029000 -
Dere04g0425 496 SUPERFAMILY Cyclophilin-like 14 180 IPR029000 -
Dere04g0425 496 CDD cyclophilin_CeCYP16-like 8 179 - -
Dere04g0425 496 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Dere04g0425 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Dere04g0425 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Dere04g0425 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Dere04g0425 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Dere04g0425 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Dere04g0425 496 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 217 IPR044666 -
Dere04g0425 496 Coils Coil 469 489 - -
Dere04g0425 496 MobiDBLite consensus disorder prediction 345 364 - -
Dere04g0425 496 MobiDBLite consensus disorder prediction 324 344 - -
Dere04g0425 496 MobiDBLite consensus disorder prediction 473 496 - -
Dere04g0425 496 Coils Coil 380 400 - -
Dere04g0425 496 MobiDBLite consensus disorder prediction 395 417 - -
Dere04g0425 496 MobiDBLite consensus disorder prediction 268 295 - -
Dere04g0425 496 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Dere04g0425 496 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0425 Dere-ChrDere04 4337253 4341947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0425 9 171 U-box Gene Family AT5G67530 47.853 7.06e-44 161