Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0420 ATGCATTCTTTGCCGTCAAATGGAATAGGTAATACAGAGTGTGCTTTTGCAGTCATGGCTGGATTGGCACCAGAGGGATCTCAATTTGATGCTCGTCAATATGATGCTAAGATGACTGAGTTACTTGGATCTGATGGGCAAGACTTCTTTACTAGTTATGATGAAGTTTATGAAAGCTTTGACGCTATGGGATTGCAAGAGAACCTTCTGAGGGGTATTTATGCATATGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAGGGACTTGATGTGATTCAGCAAGCCCAATCTGGAACTGGAAAAACTGCAACTTTTTGCTCTGGAATTTTGCAGCAGCTTGATTACAGCTTAGTTGAATGCCAGGCACTGGTTCTTGCTCCCACTCGTGAACTTGCACAACAAATTGAGAAGGTCATGCGAGCACTAGGTGATTATCTTGGAGTAAAAGTTCATGCTTGTGTGGGTGGGACTAGTGTTCGTGAAGATCAACGCATCCTGTCAAGTGGAGTCCATGTTGTTGTTGGTACCCCCGGTCGTGTATTTGACATGCTGCGGAGACAATCTCTGCGTCCTGATTATATTAAAATGTTTGTGTTGGATGAGGCAGATGAGATGCTTTCTCGGGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCACCAAAAATTCAGGTTGGTGTTTTCTCTGCCACTATGCCACCTGAAGCCTTGGAGATTACAAGGAAGTTCATGAACAAACCTGTGAGGATTCTGGTAAAACGTGATGAGCTTACCCTGGAGGGGATCAAGCAATTTCATGTCAATGTTGAGAAGGAGGACTGGAAGCTTGAGACACTTTGTGATCTTTATGAGACCTTGGCAATTACACAGAGTGTCATCTTTGTCAACACTAGGCGCAAGGTAGATTGGCTGACAGACAAGATGCGAAGTCGAGATCACACAGTTTCAGCCACCCACGGAGATATGGATCAAAATACAAGGGATATCATCATGCGGGAATTCCGTTCTGGTTCTTCTCGTGTTCTAATCACCACGGATCTTCTGGCCCGTGGTATTGACGTCCAGCAAGTCTCACTTGTTATTAATTATGATTTGCCAACTCAGCCAGAGAACTATCTCCATCGAATTGGCCGTAGTGGTCGGTTTGGAAGAAAGGGTGTTGCTATCAATTTTGTGACGAGGGATGATGAAAGGATGCTGTTTGACATCCAAAAGTTTTATAATGTGGTGATTGAGGAGCTGCCAGCCAATGTTGCTGATCTCCTTTGA 1296 0.4421 MHSLPSNGIGNTECAFAVMAGLAPEGSQFDARQYDAKMTELLGSDGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0420 431 CDD DEADc_EIF4A 62 260 - -
Dere04g0420 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 412 IPR027417 -
Dere04g0420 431 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 58 86 IPR014014 GO:0003724
Dere04g0420 431 CDD SF2_C_DEAD 271 401 - -
Dere04g0420 431 Gene3D - 48 266 IPR027417 -
Dere04g0420 431 SMART helicmild6 311 392 IPR001650 -
Dere04g0420 431 Pfam Helicase conserved C-terminal domain 284 392 IPR001650 -
Dere04g0420 431 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 205 213 IPR000629 -
Dere04g0420 431 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 259 IPR014001 -
Dere04g0420 431 PANTHER RNA HELICASE 47 415 - -
Dere04g0420 431 Pfam DEAD/DEAH box helicase 83 244 IPR011545 GO:0003676|GO:0005524
Dere04g0420 431 Gene3D - 267 431 IPR027417 -
Dere04g0420 431 SMART ultradead3 77 274 IPR014001 -
Dere04g0420 431 FunFam Eukaryotic initiation factor 4A-II 46 265 - -
Dere04g0420 431 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 270 431 IPR001650 -
Dere04g0420 431 FunFam Eukaryotic initiation factor 4A-III 266 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0420 Dere-ChrDere04 4309107 4311705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0420 19 431 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 765
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0420 04 4309107 4311705 Dere04g0420 04 4309107 4311705 ECH