Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0416 ATGGATGAAATAAGGGTAGAAGAGGAAGAAACGGTAACATGTGGAGTTGGCTCGTCGTCTTCTTCGTCTTCCCCTCGCCCTATGGAAGGGCTACACGAGATGGGGCCTCCTCCTTTTCTTACCAAGACCTTTGAAATGGTGGAAGACCCTTCCACCGATTCTATTATTTCTTGGAGCCTGGCTCGTAACAGCTTCGTTGTCTGGGACTCTCACAGGTTCTCCACCTCCATTCTTCCTCGATACTTCAAGCACAGTAATTTCTCTAGCTTCATTCGCCAGCTCAATACCTATGGTTTTAGAAAAGTTGATCCTGATCGATGGGAATTCGCAAACGAAGGGTTTTTGGGAGGACAGAAGCACTTGTTGAAGACCATCAAGAGAAGAAGGAATTTGTCACAGGTTGTACAACAACAAGGAGGAGCTGCTTGTGTTGAATTGGGGCAATATGGATTTGAAGGTGAGCTTGACAGGTTGAGAAGAGACCGGACGGTATTAATGGCCGAAATTGTGAGGTTGAGGCAGCAACAGCAAAATTCACGGGAGCAATTGATTGCAATGGAGGAAAGATTACAGGGCACAGAAAAGAAACAGCAACAGATACTTACTTTCCTTGCCAAAGCTCTGAACAATCCAACTTTTATACAGCAGTTTGCACAGAGAAACGCCCAGAACCGAGAATTACTAGGTGTTGAGATTAGACGAAAGAGGAGACTAACGGATAGCTCCAGTTTGGAGAATTTACAAGATGATCCTGTGACGGTGGCAGTGCCTAGTGAACCAATGGCGGACTATTCTGCCCAAGAACAAGAAGAATTGGCAACGATGGAATCTGAGATAGAGACGTTTTTCTCTGCTGCTCACGATAATGAATCTAGCAGCGATATGAAAGAGCCATGTTCAATCCCGACAGCTGGTGGGAACAATTTGGATTCAGTGAGTGATGTAATCTGGGAGGACTTGCTGAACGAAGGCTTAGTTCATGGGAATCCAGAGGATGAAGTTATAATTGGTGATTTTTCCCAGAATGATGCTCCTGTGGAAGACTTGTTAGCGAAGTCCGACGAATGGACTGAGGGCTTGCAGGACATAGTGGATCAAATGGGTTATCTTGGGTCCAAACCATAG 1125 0.4551 MDEIRVEEEETVTCGVGSSSSSSSPRPMEGLHEMGPPPFLTKTFEMVEDPSTDSIISWSLARNSFVVWDSHRFSTSILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNLSQVVQQQGGAACVELGQYGFEGELDRLRRDRTVLMAEIVRLRQQQQNSREQLIAMEERLQGTEKKQQQILTFLAKALNNPTFIQQFAQRNAQNRELLGVEIRRKRRLTDSSSLENLQDDPVTVAVPSEPMADYSAQEQEELATMESEIETFFSAAHDNESSSDMKEPCSIPTAGGNNLDSVSDVIWEDLLNEGLVHGNPEDEVIIGDFSQNDAPVEDLLAKSDEWTEGLQDIVDQMGYLGSKP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0416 374 Pfam HSF-type DNA-binding 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0416 374 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 277 IPR027725 -
Dere04g0416 374 MobiDBLite consensus disorder prediction 13 27 - -
Dere04g0416 374 Coils Coil 155 196 - -
Dere04g0416 374 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0416 374 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0416 374 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0416 374 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0416 374 SMART hsfneu3 35 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0416 374 SUPERFAMILY "Winged helix" DNA-binding domain 35 128 IPR036390 -
Dere04g0416 374 Gene3D - 32 129 IPR036388 -
Dere04g0416 374 MobiDBLite consensus disorder prediction 1 30 - -
Dere04g0416 374 FunFam Heat shock transcription factor 1 32 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0416 Dere-ChrDere04 4280027 4281405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0416 25 374 HSF AT2G26150 54.958 1.66e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere04g0416 HSF_DNA-bind 5.6e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0416 04 4280027 4281405 Dere04g0416 04 4280027 4281405 ECH