Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0404 ATGCCCAGAATGAAGCATCTACTGAGAAAGCTTCACATCGGTGGTGGCATCAATGATCACCAGAGATTGCCTGACACTCGTCCAGTGCTCAGCCCCACCCCCAATCTCACTTTATCTTCTTCTACTTTGGCGTCCCCTACAATGGCCACCGTCGCTTCAAATGAATCCGTTGCTGATCGGACGGCTATTGATGGTACCGCGGGGATTGTCGGCGACAAGGGAGTGGATTTCAATCTTTTGGAGGAGGACTTTCAGATGCAGTTGGCTTTAGCAATTAGCGCTTCCGATCCTGATGTCCGCAAGGACCCAGATTCTGCTCAGATCGATGCTGCCAAGCAGATGAGCCTCGGGTGTGAAGCTTCTGTTACTGACACGGAAGCCCTTGTCCAGTTTCAATCGCTTCGTTATTGGAACTACAATGTCATTGATTATGAAGAGAAAGTGATGGATGGATTTTATGACGTTTATGGCTTCACCTCAAATATAGCTGAACGAGGAAAGATGCCATTGTTGGTGGATCTGCAAACTACGCCCATCTCTGAAAATCTTGATTGTGAAGTGGTTTTGGTGAACCGCATAGTTGATTTTGAGCTGAAGCAGCTTGAGGAAAAAGCCTATAAGTTATCCAAGGACTGTTGCCTCTCTGAACGAGGATTAATTTTAAGTGGTTTACTTCAGAAACTTGCTGACATTGTTGTTAATCGATTGGGTGGGCCAGTTGGTGATGCTGATGAAATGTTGAAAAGGTGGACCATGAGGAACTGCGAGTTAAGAAATTCATTAAGAACCATTATTCTTCCCATCGGCTATCTTGATGTTGGACTTTCACGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGAATTAATGTTCCCTGTATGCTGGTCAAAGGGAGTTACTACACTGGAACTGATGATGGAGCAGTGAATTTGATTAAAGCTGACGATGGAAGTGAATACATTATTGATCTGATGGGTGCTCCTGGTGCTCTTATTCCTGCTGAAGTACCCAGTAGTCAGCTCCAAAACTACAGTTTTACTGTAAGGGGCCGTCCAGATGTTGTGGAAGTACCTAACAACACACATTTGATGCTTGGGGACAGAAATAGAATGCTGGCAGTTTCATCTGATCTTGAAAGAGTTTCAACAGTTCGCAACACTCAGTCAGAAGACTTACTAAATTTTGGCAGTAAAATTAAACCAGATGAAATTCATTGTGTTGGAATAAATCAAACAGAGAGATTTGGGCATGACTTGGGCAATCTTCTCCAGTCACTGCATAAATCACATGAAAGCTCATCACATACGAAGGCATCACCTTCAGAAAAAAAGCAAGTAAAAAATGTCTCCAAATATGTCCTAAGTGCAGCAAAAGATCCAGAGTTTGCTCAAAAATTACACACTGTTTTATTAGAGAGTGGTGCGCTACCTCCTCCTGATCTATTTTCACATATAAATACACAAGATACAGCTGAAGATAAAGTAGATGATAAATTTCGTCAGGGAAATGAAAAATTTGTTGAAAATTCTGTCCAAGTTGAACCAGATGGCTTATTATCAAGCTATGAGGAGTCTGTCAAACCCCCTCAAGGGGTGCGCTTGGCCAGTGACAATACAAGAAAGGGGTTTGTGACTGTTTGTAATGGAATTAAAGAATTGGAGCACATCGAAGCCGTAATTGTTGATAGTGTTTTTGTGAATCCTCATCAGATAAATGAGAAGCAATTTCTTGAGTCGTCCTTGCCCAAGGCAGCTGGATCTTGCAAAAGACAAATTGCAGCTAACACTGTCTATGATGATGATGAAAATGGTCCTAATAATAAGGTTGGGGGGGCTATTATTGACAGTGAATTGGATAAAGATTCTACTGTTCAATTAAATGAAACAGCCAACAGAGGTTGCATTTCATATGATGGTAAAAGTGAAAAAGTTAACGCAGTTCTGGGGGAGAGCACAGAATGGGAAATTCAATGGGAGGATCTTCACGTTGGTGAGCGTATTGGTATTGGGTCCTATGGTGAGGTTTACCATGCTGACCTGAAAGGCACTGAAGTTGCTGTGAAGAAGTTTCTAGACCAAGATTTTTCGGGTGATGCATTGGCTCAGTTCAAATCTGAAGTTGATATCATGTTGAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCCCCACACTTCTCTATCTTGATGGAATTTCTTCCTAGAGGGAGTTTATATAGGCTATTACATCGTCCCAATTTTCAACTTGATGAAAAGAGACGGTTGCGTATGGCTTTTGATGTGGCTAAGGGAATGAATTACTTGCACACAAGCCATCCTCCCATTGTCCATCGAGATCTAAAGTCTCCAAATCTTCTTGTTGACAAACATTGGGTTGTTAAGGTCTGTGATTTTGGTTTGTCACGCATGAAGCACCATACTTATCTGTCTTCAAAGTCTACTGCTGGAACGCCTGAGTGGATGGCCCCAGAAGTCTTGAGAAATGAACCAGCCAATGAGAAGTGTGATGTATATAGTTTTGGTGTGATTTTGTGGGAGTTGGCTACCACAAAGATCCCGTGGAAAGGGTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTTCAAAATAGACGGCTTGAAATTCCTGAAAATGTTGATCCAGTAGTAGCGCAAATTATATGTGATTGTTGGCAAATGGAGCCACACTTGCGGCCATCATTCTCACAGATCATGTCTCGTCTCCGCCACCTTAAACGTCTTCTTGCTGGAACAACGAACTTAACACACTAA 2790 0.4258 MPRMKHLLRKLHIGGGINDHQRLPDTRPVLSPTPNLTLSSSTLASPTMATVASNESVADRTAIDGTAGIVGDKGVDFNLLEEDFQMQLALAISASDPDVRKDPDSAQIDAAKQMSLGCEASVTDTEALVQFQSLRYWNYNVIDYEEKVMDGFYDVYGFTSNIAERGKMPLLVDLQTTPISENLDCEVVLVNRIVDFELKQLEEKAYKLSKDCCLSERGLILSGLLQKLADIVVNRLGGPVGDADEMLKRWTMRNCELRNSLRTIILPIGYLDVGLSRHRALLFKVLADRINVPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDLMGAPGALIPAEVPSSQLQNYSFTVRGRPDVVEVPNNTHLMLGDRNRMLAVSSDLERVSTVRNTQSEDLLNFGSKIKPDEIHCVGINQTERFGHDLGNLLQSLHKSHESSSHTKASPSEKKQVKNVSKYVLSAAKDPEFAQKLHTVLLESGALPPPDLFSHINTQDTAEDKVDDKFRQGNEKFVENSVQVEPDGLLSSYEESVKPPQGVRLASDNTRKGFVTVCNGIKELEHIEAVIVDSVFVNPHQINEKQFLESSLPKAAGSCKRQIAANTVYDDDENGPNNKVGGAIIDSELDKDSTVQLNETANRGCISYDGKSEKVNAVLGESTEWEIQWEDLHVGERIGIGSYGEVYHADLKGTEVAVKKFLDQDFSGDALAQFKSEVDIMLRLRHPNVVLFMGAITRPPHFSILMEFLPRGSLYRLLHRPNFQLDEKRRLRMAFDVAKGMNYLHTSHPPIVHRDLKSPNLLVDKHWVVKVCDFGLSRMKHHTYLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELATTKIPWKGLNPMQVVGAVGFQNRRLEIPENVDPVVAQIICDCWQMEPHLRPSFSQIMSRLRHLKRLLAGTTNLTH 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0404 929 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 114 920 - -
Dere04g0404 929 Gene3D Phosphorylase Kinase; domain 1 655 739 - -
Dere04g0404 929 ProSiteProfiles Protein kinase domain profile. 662 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0404 929 Pfam Ethylene-responsive protein kinase Le-CTR1 130 333 - -
Dere04g0404 929 Gene3D Transferase(Phosphotransferase) domain 1 741 922 - -
Dere04g0404 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Dere04g0404 929 MobiDBLite consensus disorder prediction 431 445 - -
Dere04g0404 929 MobiDBLite consensus disorder prediction 428 447 - -
Dere04g0404 929 FunFam Serine/threonine-protein kinase CTR1 741 924 - -
Dere04g0404 929 SUPERFAMILY Protein kinase-like (PK-like) 651 914 IPR011009 -
Dere04g0404 929 Pfam Protein tyrosine and serine/threonine kinase 662 914 IPR001245 GO:0004672|GO:0006468
Dere04g0404 929 SMART serkin_6 662 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0404 929 PRINTS Tyrosine kinase catalytic domain signature 822 832 IPR001245 GO:0004672|GO:0006468
Dere04g0404 929 PRINTS Tyrosine kinase catalytic domain signature 736 749 IPR001245 GO:0004672|GO:0006468
Dere04g0404 929 PRINTS Tyrosine kinase catalytic domain signature 775 793 IPR001245 GO:0004672|GO:0006468
Dere04g0404 929 PRINTS Tyrosine kinase catalytic domain signature 885 907 IPR001245 GO:0004672|GO:0006468
Dere04g0404 929 PRINTS Tyrosine kinase catalytic domain signature 841 863 IPR001245 GO:0004672|GO:0006468
Dere04g0404 929 FunFam Serine/threonine-protein kinase isoform 1 652 740 - -
Dere04g0404 929 CDD STKc_MAP3K-like 668 914 - -
Dere04g0404 929 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0404 Dere-ChrDere04 4144641 4153742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0404 1 920 MAP Kinase Kinase Kinase AT5G11850 56.270 0.0 977
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Dere04g0404 PK_Tyr_Ser-Thr 5.9e-66 CL0016