Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0397 ATGTGGATGGAAAAAGATATGTTGAGTGCCCCAGTTGGTATGGCTGGCCGAAATGCAAGTGTCATTAATGAAACTCCACAAAATCCTACTCCCAACTCACTGATTCAGTGCCATTCATTAAACATCAATGACCAAACCCGTATCTTAAACGGAATATCGATGCTTTCTGGTTCTGGAGTGCACGGTGAACAAGTAAGTAATGTCAATGTACGCTTGATAAATCATGAAAGTGTTGCTGATTCTAATACGTTAGTTACATCGCAAAGAAAGAATATTTCAGGCTGTGCCTCACTTGGAACTTCAAGTCCCATACACAACAATGAATATCAGGAGCAAACCGCTGGAGGAACACTAATTACCCCAGCTTCACTTGCTGCCATTCTTGCTGCTAGAATTTCTCTTCATGAGAATTTAGACAAATCGCCAGCTTTGTCTCCTTCATTCTGTTCATTAGAGTCATTGGAACCTTATATCTTAGACAACTGGTCATATACACCAAACCATTTGCATTTAACTTCTGGGGACCTTGGCTGCAGTCAAATACCTGATGGAAACCTGGATTCAAATGGATGGTCTTCATCAATTATTGCAGACTTGAACAGTCGTGCTTACAGTTTGTCTAGTTTCAGTAATGAGCTTGTACTAAGTCTTGCAACATCTCCCGCCCCAGGTCAGTTCTTAGAGGTGACTTGTTCTGATGATGTTACCCGTTGCTTCAATAAAACTAGGTCAGGCTTGGACCAAGCCTCTTGCAGCAACAGGGTGCTTTCTATGAGTTTGGACTCTAATAGAGACGTTCATTTTTCACAAGCAATGTTGGGATCAAGATATCTTACTGGAGTTCAAGAGATACTCGCTCAACTTGCGAGATTTTCCCTTGAAAATCTTGAACAGATAACATTTTCACAAGCAAATTCTATGTTTCAATTTCACATGGAAGCTCCATGGCAAAGACATGCAGCTGAATCAAAGAAATCCCAACTGCTGACACTTCTAGATTTGGTGGACAAGCGATATAGTCAGTGTTTGGTCGAGATACATACGGTTGTGTCCGCATTCCATGCTGCTACAGAGTGTGATCCACACGTGCATACACATTTTGCTCTTCAAACAATCTCACACTTATACAGGGACTTGCGCGAGAGAATTAGCAATTATATTCTTGCCATGGGGGCTGATTTTGACAATTTATGTACAAATGAGAAGGAAAGATCTATTGAAACTTCATACATCCAAAAGCAATGGGCTTTCCAACAGTTGAAAAGAAAGGACCACCAATTATGGAGGCCCCAAAGGGGCTTGCCAGAAAAATCTGTCTCAGTCTTACGAGCTTGGATGTTTCAAAACTTCCTTCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCTAACTGGTTTATAAATGCTCGTGTTCGGCTATGGAAACCTATGATTGAGGAAATGTATGCTGAAATGGATAAAAGAAAGCCTAGTCGAAATGGAGGACGAAGGGAGAGTAGCCACAGAAGCAGGATAAGCTTGGGCAATCAAAATTTTAGTTTGAGATGA 1584 0.4116 MWMEKDMLSAPVGMAGRNASVINETPQNPTPNSLIQCHSLNINDQTRILNGISMLSGSGVHGEQVSNVNVRLINHESVADSNTLVTSQRKNISGCASLGTSSPIHNNEYQEQTAGGTLITPASLAAILAARISLHENLDKSPALSPSFCSLESLEPYILDNWSYTPNHLHLTSGDLGCSQIPDGNLDSNGWSSSIIADLNSRAYSLSSFSNELVLSLATSPAPGQFLEVTCSDDVTRCFNKTRSGLDQASCSNRVLSMSLDSNRDVHFSQAMLGSRYLTGVQEILAQLARFSLENLEQITFSQANSMFQFHMEAPWQRHAAESKKSQLLTLLDLVDKRYSQCLVEIHTVVSAFHAATECDPHVHTHFALQTISHLYRDLRERISNYILAMGADFDNLCTNEKERSIETSYIQKQWAFQQLKRKDHQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMDKRKPSRNGGRRESSHRSRISLGNQNFSLR 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0397 527 Gene3D - 431 510 - -
Dere04g0397 527 MobiDBLite consensus disorder prediction 497 515 - -
Dere04g0397 527 ProSiteProfiles 'Homeobox' domain profile. 425 488 IPR001356 GO:0003677
Dere04g0397 527 SUPERFAMILY Homeodomain-like 429 497 IPR009057 -
Dere04g0397 527 Pfam Homeobox KN domain 445 484 IPR008422 GO:0003677|GO:0006355
Dere04g0397 527 MobiDBLite consensus disorder prediction 497 527 - -
Dere04g0397 527 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 187 510 - -
Dere04g0397 527 SMART HOX_1 428 492 IPR001356 GO:0003677
Dere04g0397 527 Pfam Associated with HOX 273 384 IPR006563 -
Dere04g0397 527 SMART prehox3 266 385 IPR006563 -
Dere04g0397 527 CDD homeodomain 428 489 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0397 Dere-ChrDere04 4110046 4111994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0397 211 501 Homeobox Transcription Factor Family AT4G32980 54.516 9.58e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere04g0397 POX 2.4e-22 No_clan