Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0378 ATGATGATCGGAGATCCTACAAGTTTGGTGGTCCCTACTCCTGTTCTTCAATATTCGCATTCAGAATCTGATGATTCACTGGCAGTACCACCTTCACCCTCCCCATTCCCTATTCAATTCTACAGCAATGCCGGTGCCGGCGACTACTCTGTTTCCCTGGACTCCTCCATCCTCCTCCACTCTTTTCTTTCCAATGATTTCACCCCAACCCAATTGCACACACTCGCTCAAGATTTTGACATGGCTATTGATGCTTTGTCCAGCGATCATTTCCGCATGTTCGAGTTTAAGATCCGCAAGTGTGCACGTGGCAGGTCTCACGACTGGACCCACTGCCCCTACGCCCATCCCGGCGAGAAGGCTCGCCGCCGGGACCCTCGCAAATTCCACTACTCCGCCACCCCATGTCCTGACTTTCGCCAAGCCAATTGCAAGAAAGGCGACTCCTGCGACTTCGCTCACGGAGTCTTCGAATGTTGGCTTCACCCTTCTCGCTACAGGACTCAGCTCTGCAAGGATGCAACCAATTGTCGCCGCCGAGTCTGTTTCTTTGCTCACACTCCAGATCAACTGCGTGTCCTCACTCGCTGCTCCGGCGAATCTTCGGACGGGTCGCCCATGCCTCCCTCCCTGGATTCTTCCTTTCTCTCATCGCCTACTTCGGTCCTCAACTCGCCGATGCCTGACTCCTTATCCTTGTCGTCCGGCACCTCTCAGCATGGAGGCAAAACATTCAATGCGATGAGTGAAATAGTTACTTCAATGCGTAATGTTCAACTTGATTCAACCCGGATGGGTTCTGGATTTGATTCTCCCCGTGGTTTGATTCCCCGGCCCGGGTTTTTCAGCCTTCCATCAACTCCGACTTGGGCAAAAACTGATAAATCTGGACCCGGTCCGGCGGAAATCTGGGATCGGAGCTACGAAGAAGAGGCTCCCATGGAGAGGGTGGAATCGGGAAGAGACCTTAGAGCCAAAATCTATGCCAAACTCAGCAAGGAAAACTCATTTGGGCGAAGCGAATCGGGTTCTTCGGCTCCTGATTTTGGATGGGTCTCCGAACTGGTGAAGTGA 1074 0.527 MMIGDPTSLVVPTPVLQYSHSESDDSLAVPPSPSPFPIQFYSNAGAGDYSVSLDSSILLHSFLSNDFTPTQLHTLAQDFDMAIDALSSDHFRMFEFKIRKCARGRSHDWTHCPYAHPGEKARRRDPRKFHYSATPCPDFRQANCKKGDSCDFAHGVFECWLHPSRYRTQLCKDATNCRRRVCFFAHTPDQLRVLTRCSGESSDGSPMPPSLDSSFLSSPTSVLNSPMPDSLSLSSGTSQHGGKTFNAMSEIVTSMRNVQLDSTRMGSGFDSPRGLIPRPGFFSLPSTPTWAKTDKSGPGPAEIWDRSYEEEAPMERVESGRDLRAKIYAKLSKENSFGRSESGSSAPDFGWVSELVK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0378 357 MobiDBLite consensus disorder prediction 197 241 - -
Dere04g0378 357 ProSiteProfiles Zinc finger C3H1-type profile. 131 157 IPR000571 GO:0046872
Dere04g0378 357 FunFam Zinc finger CCCH domain-containing protein 66 88 156 - -
Dere04g0378 357 SMART c3hfinal6 165 188 IPR000571 GO:0046872
Dere04g0378 357 SMART c3hfinal6 130 156 IPR000571 GO:0046872
Dere04g0378 357 Gene3D - 130 193 - -
Dere04g0378 357 MobiDBLite consensus disorder prediction 335 357 - -
Dere04g0378 357 PANTHER UNKEMPT FAMILY MEMBER 45 357 IPR045234 -
Dere04g0378 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0378 Dere-ChrDere04 3898417 3899490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0378 80 224 C2H2 Transcription Factor Family AT5G12850 59.060 6.01e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere04g0378 zf-CCCH 0.00031 CL0537