Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0377 ATGGAGGAATACAGTAATCAGGTGAGCGAAAACACAGGTTCAGGGCCTAATTTCTTGTACTCCTCCGCTGCAGTTGGAGGTTCAAGCGTGGGAAATCATCACCACTCGCCCACCACTAACTTTCATCTTCAATCAGGTGGATCAGAGGGCTATCAATCTGTGAAAACCGAAACTAATACCTCCCACCACACTCAGATTTTCCACTATCCTTTAATCGCACCAAATCTTCAGAATCAAGGAGGAAGCCAGACCTCTGATGAAATTGAAGCCATTAAAGCTAAAATCATTGCTCATCCGCACTACTCCAACCTTTTGGAAGCTTACATGAATTGCCACAAGGTAGGAGCTCCACCGGATGTGGTGGCGCGTCTGGCTGCGTCGCGGCAGGAGTTTCAGGCACGGCAGCGATCTTCGGTCAGATCCAGGGAAACTTGCCAGGACCCAGAACTTGACCGATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATGGAGAGGAATTAACAAGGCCAATCCAAGAGGCAATGGATTTCCTGCACAACATTGAATCTGAGCTCAATATGCTTTGCAATGGATCCTTGCGCATTTTCCCTGAAGGTATGGGTGAAGGTGTGGATTCATCCGAAGAGGAACAAGACAACAGTGGTGGAGAAACAGAAATGCCTGAAATTGATCCCCGAGTTGAAGACCGTGAGCTTAAGAACCACTTGCTAAGGAAGTACAGTGGGTACTTAGGTAGCCTAAGGCAAGAACTTTCAAAGAAAAAGAAGAAAGGAAAATTGCCTAAAGATGCCAGGCAAAAGCTACTTAACTGGTGGGAATTACACTATAAATGGCCCTATCCTTCGGAATCAGAGAAGGTGGCGTTGGCAGAGTCGACAGGGTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGCGGCACTGGAAGCCATCGGAAGACATGCAGTTTATGGTGATGGATGGCCTGCATCCACAGAACCCCACTCTTTATATGGACGCTCACTACATGGCTGGTACTCACTACCGTCTAGGGCCATGA 1053 0.4691 MEEYSNQVSENTGSGPNFLYSSAAVGGSSVGNHHHSPTTNFHLQSGGSEGYQSVKTETNTSHHTQIFHYPLIAPNLQNQGGSQTSDEIEAIKAKIIAHPHYSNLLEAYMNCHKVGAPPDVVARLAASRQEFQARQRSSVRSRETCQDPELDRFMEAYYDMLVKYGEELTRPIQEAMDFLHNIESELNMLCNGSLRIFPEGMGEGVDSSEEEQDNSGGETEMPEIDPRVEDRELKNHLLRKYSGYLGSLRQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNPTLYMDAHYMAGTHYRLGP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0377 350 Pfam KNOX1 domain 90 132 IPR005540 GO:0003677|GO:0005634
Dere04g0377 350 Pfam KNOX2 domain 144 190 IPR005541 GO:0003677|GO:0005634
Dere04g0377 350 SMART ELK_2 232 253 IPR005539 GO:0003677
Dere04g0377 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 322 - -
Dere04g0377 350 SMART KNOX2_2 140 191 IPR005541 GO:0003677|GO:0005634
Dere04g0377 350 FunFam Homeobox protein knotted-1-like 2 257 319 - -
Dere04g0377 350 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
Dere04g0377 350 Pfam ELK domain 232 253 IPR005539 GO:0003677
Dere04g0377 350 SUPERFAMILY Homeodomain-like 253 328 IPR009057 -
Dere04g0377 350 CDD homeodomain 264 316 IPR001356 GO:0003677
Dere04g0377 350 MobiDBLite consensus disorder prediction 204 218 - -
Dere04g0377 350 SMART KNOX1_2 89 133 IPR005540 GO:0003677|GO:0005634
Dere04g0377 350 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
Dere04g0377 350 Gene3D - 257 319 - -
Dere04g0377 350 MobiDBLite consensus disorder prediction 28 54 - -
Dere04g0377 350 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677
Dere04g0377 350 SMART HOX_1 254 319 IPR001356 GO:0003677
Dere04g0377 350 MobiDBLite consensus disorder prediction 200 229 - -
Dere04g0377 350 ProSitePatterns 'Homeobox' domain signature. 290 313 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0377 Dere-ChrDere04 3858328 3861330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0377 53 350 Homeobox Transcription Factor Family AT4G08150 67.857 2.36e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere04g0377 KNOX2 1.3e-22 No_clan