Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0374 ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTGAAGAGAGGCCCCTGGTCCCCTGAAGAAGATGCGAAGCTCAAGTCCTATATTGAACAGCACGGCACCGGTGGTAACTGGATCGCTTTGCCACAGAAGATCGGGCTAAAGAGATGTGGGAAGAGTTGCCGTCTGAGGTGGCTAAACTATCTTCGCCCTAATATCAAACACGGGGGTTTCTCTGAAGAAGAAGACAACATCATATGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATCGCAGCCCAATTGCCTGGAAGAACAGATAATGATATAAAGAACTACTGGAACACAAGGCTGAAAAAGAAGCTTCTGGGAAAGCAACGTAAAGAACAACAGGCACGTAGTAGAGGCAAGGGTAGTGTTGGTGTTAAGCAGGGAGTGAATAAGGGTGGGAATATTGATGGGGATTCATCGCTTCTTTCCGGAAATAGTGGTCAGCCTCAACACCCATATTGGCCACATCATCAGATGATGCCTGTGCTACCACCATTGCCATGCTCAAACCAAGCCCCAGGTTTCAACGACCAAGATTCCATTAGAAAACTGCTTATCAAGCTGGGAGGAACATTTTCTGACCATCATGATGGGTTCAATTTTCAATTACCAGATGCTACTCCGTTTGCACAATTACCAATCTATCAAGTTTCTTCTGCTTCTACGAGTGCCATTAACAACAATCAACCAGACTTCCCTCAAATCCACTACTCCGGACTCAATAACTTGGTGCAAGGAGGCAGTTTCACCCAAGCACTGGAGGAAATGTCCGTATCTTATCCACCAACACTAAATGGACTGGAAAACTTGTACGAGGAGCACATGATCAATGATGATGAGAAGATAGGCCCTAGCGGCTCGGGTGACTCCAACTTTCTGGTTCATCCTCCTCTACTTGCTTCCAATTATGAATGTATGCTACCTCAGGAATTTGCTTTTCAGGAGTTGAGGTATCCAGGCGTCCACTAG 1005 0.4697 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQARSRGKGSVGVKQGVNKGGNIDGDSSLLSGNSGQPQHPYWPHHQMMPVLPPLPCSNQAPGFNDQDSIRKLLIKLGGTFSDHHDGFNFQLPDATPFAQLPIYQVSSASTSAINNNQPDFPQIHYSGLNNLVQGGSFTQALEEMSVSYPPTLNGLENLYEEHMINDDEKIGPSGSGDSNFLVHPPLLASNYECMLPQEFAFQELRYPGVH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0374 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dere04g0374 334 PANTHER OS09G0431300 PROTEIN 1 132 - -
Dere04g0374 334 CDD SANT 71 113 IPR001005 -
Dere04g0374 334 FunFam Transcription factor RAX3 70 146 - -
Dere04g0374 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dere04g0374 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dere04g0374 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere04g0374 334 MobiDBLite consensus disorder prediction 145 164 - -
Dere04g0374 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere04g0374 334 FunFam Transcription factor RAX3 7 68 - -
Dere04g0374 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dere04g0374 334 Gene3D - 70 136 - -
Dere04g0374 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dere04g0374 334 SMART sant 13 64 IPR001005 -
Dere04g0374 334 SMART sant 67 115 IPR001005 -
Dere04g0374 334 CDD SANT 16 62 IPR001005 -
Dere04g0374 334 Gene3D - 7 68 - -
Dere04g0374 334 MobiDBLite consensus disorder prediction 119 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0374 Dere-ChrDere04 3827285 3828500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0374 1 226 MYB Transcription Factor Family AT3G49690 59.746 1.22e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere04g0374 Myb_DNA-binding 1.7e-14 CL0123