Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0364 ATGGGTGGTCTTGAAAATGCCATGGGGTTTCAACATAGGAATGAGAGCATTCTGAATTGTCCTTCATCGGGTTTGAGCACCAATGTTCCAGATTTATGCAATCCTTTTCTTGGTTCATCTAGTTGGGATCCGCTTGTTTCATTGAGTCAGACTCAAAGCTTTGGAGGCTCTTCATTGGTTTCTCGTAGCGAGTTTGCTAACTCATCTTACCCGATTGTCTTGGAAAATCAAGGAATGAGTAGCTCCTCTCACCATGTTCAGTATATATCTGTCTCAAATTTTGCGGACATGGTCCCAAAGGGCCCCTCCTATAGAAGTGGTGAGATAGCTAATTCAGGGTATGTGTCAAATTATAATCCGAACAAGGAAGCAGGCATTGAAAGAACTCCAATTAATGATGCACATTCTCAGAGTGAGAACTCCACTCCTGAAGAGGGAGTCACAGCCTCTGCACCTTATGGAAATAGAAGAAAGCGAGGGCTTGATTACAATTCTACATTTAGTCCAAATAAGGGCGCTGAAGCCGAAGCCCTGAAGGATTTATCTGGCAAGAGCTCAGATGGCGTGAAAGAACAAGATGATAAGAAACCAAAATTAGATCAAAATACAAGTGCAGATTTGCGTGTTAAGCAATCAGTGAAGCAATCTAAAGACAACTCTCACAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGAGCTCGAAGAGGTCAAGCTACGAACAGTCATAGCCTTGCAGAAAGGGTAAGAAGAGAAAAGATAAGCGAGAGAATGCGGTTACTACAAGACCTTGTTCCCGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTTGATGAGATCATTAACTACGTGCAATCACTGCAACAGCAGGTGGAGTTTTTGTCCATGAAACTTGCCACTGTGAACCCTGAACTGAATTTTGATGTAGAGCGGATGTTATCCAAAGATATTCTGCAGTCGAACATTGGACATGGGGCGATTGGTGGTGGATACGGTGCTGGTATCATCAACTCCACCCACCTATTCCCGAGTGGAAGTTTTCAGAGGACCCTGGGAAGCATGCCCAGCACATCACATATCCATCCTTTGCCTCAGAGTGTTATGGACCATGAGCTCCACAGCTTATACGGAGTGGGATACGATTCTAGTACAGCTCTTCAAAACTTGGGACCAAATGGATGGTTGGAAACAGGGTCATAA 1206 0.4395 MGGLENAMGFQHRNESILNCPSSGLSTNVPDLCNPFLGSSSWDPLVSLSQTQSFGGSSLVSRSEFANSSYPIVLENQGMSSSSHHVQYISVSNFADMVPKGPSYRSGEIANSGYVSNYNPNKEAGIERTPINDAHSQSENSTPEEGVTASAPYGNRRKRGLDYNSTFSPNKGAEAEALKDLSGKSSDGVKEQDDKKPKLDQNTSADLRVKQSVKQSKDNSHSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERMLSKDILQSNIGHGAIGGGYGAGIINSTHLFPSGSFQRTLGSMPSTSHIHPLPQSVMDHELHSLYGVGYDSSTALQNLGPNGWLETGS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0364 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 289 IPR011598 GO:0046983
Dere04g0364 401 MobiDBLite consensus disorder prediction 211 234 - -
Dere04g0364 401 FunFam Basic helix-loop-helix transcription factor 236 308 - -
Dere04g0364 401 Pfam Helix-loop-helix DNA-binding domain 242 290 IPR011598 GO:0046983
Dere04g0364 401 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 138 352 IPR024097 GO:0006355
Dere04g0364 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 307 IPR036638 GO:0046983
Dere04g0364 401 CDD bHLH_AtBPE_like 229 312 - -
Dere04g0364 401 Gene3D - 236 311 IPR036638 GO:0046983
Dere04g0364 401 MobiDBLite consensus disorder prediction 133 249 - -
Dere04g0364 401 MobiDBLite consensus disorder prediction 133 148 - -
Dere04g0364 401 SMART finulus 245 295 IPR011598 GO:0046983
Dere04g0364 401 MobiDBLite consensus disorder prediction 177 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0364 Dere-ChrDere04 3724278 3726304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0364 1 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.176 4.03e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere04g0364 HLH 4.7e-06 No_clan